myRT

myRT report for GCA_002927165.1_ASM292716v1

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Seq: JPFC01000001.1 Pseudomonas aeruginosa strain T36994 contig1, whole genome shotgun sequence (5703906 bp)
Overview 1 RT 1: 51764-57402 bp 2 RT 2: 338391-344762 bp 3 RT 3: 1482372-1486795 bp 4 RT 4: 3981088-3986552 bp 5 RT 5: 4177833-4182544 bp 6 RT 6: 4187944-4193954 bp 7 RT 7: 4362776-4367931 bp 8 RT 8: 5013610-5017081 bp Neighborhood of RT #1 [51764, 57437] WcaG SGL RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [338391, 344779] secA DciA RVT-GII GIIM LpxC Neighborhood of RT #3 [1482372, 1486795] cztS_silS_copS RVT-GII GIIM Neighborhood of RT #4 [3981088, 3986552] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII RHS Neighborhood of RT #5 [4177833, 4182771] COG3436 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C HDc Neighborhood of RT #6 [4187944, 4194013] rve DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII SMC_prok_B RmuC Neighborhood of RT #7 [4362776, 4368074] DUF4096 MDR7 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 Tra5 Neighborhood of RT #8 [5013610, 5017081] PagL RVT-GII GIIM Feature: gene Location: 51764-52570 bp Feature: domain Description: WcaG Location: 51785-52304 bp Feature: domain Description: WcaG Location: 51 785-52304 bp Feature: gene Location: 52595-53476 bp Feature: domain Description: SGL Location: 52637-53375 bp Feature: domain Description: SGL Location: 52637-53375 bp Feature: gene Location: 53627-55219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54131-54821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 31 -54821 bp Feature: gene Location: 55527-57059 bp Feature: domain Description: LZ_Tnp_IS66 Location: 55632-55845 bp Feature: domain Description: LZ_Tnp_IS66 Location: 55632-55845 bp Feature: domain Description: zf-IS66 Location: 55875-55998 bp Feature: domain Description: zf-IS66 Location: 55875-55998 bp Feature: domain Description: DDE_Tnp_IS66 Location: 56043-56898 bp Feature: domain Description: DDE_Tnp_IS66 Location: 56043-56898 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 56919-57033 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5691 9-57033 bp Feature: gene Location: 57078-57437 bp Feature: domain Description: TnpB_IS66 Location: 57108-57402 bp Feature: domain Description: TnpB_IS66 Location: 571 08-57402 bp Feature: gene Location: 338391-341066 bp Feature: domain Description: secA Location: 338394-341064 bp Feature: domain Description: secA Location: 338394-341 064 bp Feature: gene Location: 341325-341897 bp Feature: domain Description: DciA Location: 341475-341724 bp Feature: domain Description: DciA Location: 341 475-341 724 bp Feature: gene Location: 341960-343285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342221-342836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342221 -342836 bp Feature: domain Description: GIIM Note: maturase Location: 342893-343106 bp Feature: domain Description: GIIM Note: maturase Location: 342893-3431 06 bp Feature: gene Location: 343516-343701 bp Feature: gene Location: 343868-344779 bp Feature: domain Description: LpxC Location: 343871-344762 bp Feature: domain Description: LpxC Location: 343871 -344762 bp Feature: gene Location: 1482372-1483742 bp Feature: domain Description: cztS_silS_copS Location: 1482381-1483704 bp Feature: domain Description: cztS_silS_copS Location: 1 482381 -1 483704 bp Feature: gene Location: 1483897-1484082 bp Feature: gene Location: 1484313-1485638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484574-1485189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 484574-1 4851 89 bp Feature: domain Description: GIIM Note: maturase Location: 1485246-1485459 bp Feature: domain Description: GIIM Note: maturase Location: 1 485246-1 485459 bp Feature: gene Location: 1485720-1486307 bp Feature: gene Location: 1486574-1486795 bp Feature: gene Location: 3981088-3981447 bp Feature: domain Description: TnpB_IS66 Location: 3981118-3981412 bp Feature: domain Description: TnpB_IS66 Location: 3981 1 1 8-3981 41 2 bp Feature: gene Location: 3981466-3983001 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3981574-3981787 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3981 574-3981 787 bp Feature: domain Description: zf-IS66 Location: 3981817-3981940 bp Feature: domain Description: zf-IS66 Location: 3981 81 7-3981 940 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3981985-3982840 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3981 985-3982840 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3982861-3982975 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3982861 -3982975 bp Feature: gene Location: 3983309-3984901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983813-3984503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398381 3-3984503 bp Feature: gene Location: 3984936-3985091 bp Feature: domain Description: RHS Location: 3985023-3985089 bp Feature: domain Description: RHS Location: 3985023-3985089 bp Feature: gene Location: 3986250-3986552 bp Feature: gene Location: 4177833-4178009 bp Feature: gene Location: 4178331-4179572 bp Feature: domain Description: COG3436 Location: 4178742-4179036 bp Feature: domain Description: COG3436 Location: 41 78742-41 79036 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4179051-4179369 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41 79051 -41 79369 bp Feature: gene Location: 4179945-4181606 bp Feature: RT Description: RVT_N Location: 4179990-4180233 bp Feature: RT Description: RVT_N Location: 41 79990-41 80233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180278-4180914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 80278-41 8091 4 bp Feature: domain Description: GIIM Note: maturase Location: 4180971-4181199 bp Feature: domain Description: GIIM Note: maturase Location: 41 80971 -41 81 1 99 bp Feature: gene Location: 4181753-4181932 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4181804-4181915 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 81 804-41 81 91 5 bp Feature: gene Location: 4181968-4182771 bp Feature: domain Description: HDc Location: 4182169-4182544 bp Feature: domain Description: HDc Location: 41 821 69-41 82544 bp Feature: gene Location: 4187944-4188552 bp Feature: domain Description: rve Location: 4188106-4188451 bp Feature: domain Description: rve Location: 41 881 06-41 88451 bp Feature: gene Location: 4188503-4188760 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4188506-4188599 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41 88506-41 88599 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4188620-4188734 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 88620-41 88734 bp Feature: gene Location: 4189068-4190660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4189572-4190262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 89572-41 90262 bp Feature: gene Location: 4190876-4191553 bp Feature: gene Location: 4191911-4194013 bp Feature: domain Description: SMC_prok_B Location: 4191992-4192640 bp Feature: domain Description: SMC_prok_B Location: 41 91 992-41 92640 bp Feature: domain Description: RmuC Location: 4192805-4193954 bp Feature: domain Description: RmuC Location: 41 92805-41 93954 bp Feature: gene Location: 4362776-4364302 bp Feature: domain Description: DUF4096 Location: 4363070-4363289 bp Feature: domain Description: DUF4096 Location: 4363070-4363289 bp Feature: domain Description: MDR7 Location: 4363376-4364297 bp Feature: domain Description: MDR7 Location: 4363376-4364297 bp Feature: gene Location: 4364573-4364758 bp Feature: gene Location: 4364989-4366314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4365250-4365865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4365250-4365865 bp Feature: domain Description: GIIM Note: maturase Location: 4365922-4366135 bp Feature: domain Description: GIIM Note: maturase Location: 4365922-43661 35 bp Feature: gene Location: 4366654-4367175 bp Feature: domain Description: HTH_Tnp_1 Location: 4366681-4366837 bp Feature: domain Description: HTH_Tnp_1 Location: 4366681 -4366837 bp Feature: domain Description: HTH_Tnp_1 Location: 4366858-4367083 bp Feature: domain Description: HTH_Tnp_1 Location: 4366858-4367083 bp Feature: gene Location: 4367208-4368074 bp Feature: domain Description: Tra5 Location: 4367280-4367931 bp Feature: domain Description: Tra5 Location: 4367280-4367931 bp Feature: gene Location: 5013610-5013741 bp Feature: gene Location: 5013784-5014293 bp Feature: domain Description: PagL Location: 5013886-5014285 bp Feature: domain Description: PagL Location: 501 3886-501 4285 bp Feature: gene Location: 5014496-5015821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5014757-5015372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 4757-501 5372 bp Feature: domain Description: GIIM Note: maturase Location: 5015429-5015642 bp Feature: domain Description: GIIM Note: maturase Location: 501 5429-501 5642 bp Feature: gene Location: 5016052-5016237 bp Feature: gene Location: 5016446-5017081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WcaG (COG0451), SGL (pfam08450), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), secA (TIGR00963), DciA
GIIM (pfam08388), LpxC (pfam03331), cztS_silS_copS (TIGR01386), RHS (pfam03527), COG3436 (Transposase ), RVT_N (pfam13655), HDc (smart00471), rve (pfam00665), SMC_prok_B (TIGR02168), RmuC (pfam02646)
DUF4096 (pfam13340), MDR7 (cd08276), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), PagL (pfam09411)