myRT

myRT report for GCA_002927655.1_ASM292765v1

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Seq: PIIT01000011.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_11, whole genome shotgun sequence (40960 bp)
Overview 1 RT 1: 27363-31245 bp Neighborhood of RT #1 [27363, 31250] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27363-28079 bp Feature: domain Description: rph Location: 27366-28074 bp Feature: domain Description: rph Location: 27366-28074 bp Feature: gene Location: 28130-28786 bp Feature: domain Description: pyrE Location: 28148-28781 bp Feature: domain Description: pyrE Location: 281 48-28781 bp Feature: gene Location: 29084-30043 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29219-29768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2921 9-29768 bp Feature: gene Location: 30089-30685 bp Feature: domain Description: slmA Location: 30095-30671 bp Feature: domain Description: slmA Location: 30095-30671 bp Feature: gene Location: 30792-31250 bp Feature: domain Description: dut Location: 30798-31245 bp Feature: domain Description: dut Location: 30798-31 245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIT01000120.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_120, whole genome shotgun sequence (2420 bp)
Overview 1 RT 1: 671-2303 bp Neighborhood of RT #1 [671, 2338] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 671-2338 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: HNHc Note: nucleases Location: 2144-2303 bp Feature: domain Description: HNHc Note: nucleases Location: 2 144-2 303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PIIT01000163.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_163, whole genome shotgun sequence (7610 bp)
Overview 1 RT 1: 3-3648 bp Neighborhood of RT #1 [3, 3653] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-131 bp Feature: gene Location: 465-674 bp Feature: gene Location: 809-2710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1907 bp Feature: domain Description: Intron_maturas2 Location: 2021-2279 bp Feature: domain Description: Intron_maturas2 Location: 2021-2279 bp Feature: domain Description: HNHc Note: nucleases Location: 2453-2615 bp Feature: domain Description: HNHc Note: nucleases Location: 2453 -2615 bp Feature: gene Location: 2905-3357 bp Feature: domain Description: PRK13732 Location: 2911-3355 bp Feature: domain Description: PRK13 73 2 Location: 2911-3 3 55 bp Feature: gene Location: 3420-3653 bp Feature: domain Description: DUF905 Location: 3450-3648 bp Feature: domain Description: DUF905 Location: 3 450-3 648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PIIT01000165.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_165, whole genome shotgun sequence (2072 bp)
Overview 1 RT 1: 1-2057 bp Neighborhood of RT #1 [1, 2057] RVT-GII GIIM Feature: gene Location: 1-1392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 -1006 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1279 bp Feature: gene Location: 1686-2057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIT01000046.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_46, whole genome shotgun sequence (28292 bp)
Overview 1 RT 1: 7044-11044 bp Neighborhood of RT #1 [7044, 11052] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 7044-8405 bp Feature: domain Description: DcuC Location: 7047-8379 bp Feature: domain Description: DcuC Location: 7047-8379 bp Feature: gene Location: 8458-8829 bp Feature: gene Location: 9051-9497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9357-9459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935 7-945 9 bp Feature: gene Location: 9545-9694 bp Feature: gene Location: 10021-11052 bp Feature: domain Description: Asparaginase_2 Location: 10111-11044 bp Feature: domain Description: Asparaginase_2 Location: 10111-11044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: PIIT01000063.1 Escherichia coli strain F_GNB_2809 GNB-2809_S16_L001_R1_001_(paired)_contig_63, whole genome shotgun sequence (47853 bp)
Overview 1 RT 1: 24539-27594 bp Neighborhood of RT #1 [24539, 27594] RVT-GII RVT-GII GIIM Feature: gene Location: 24539-25444 bp Feature: gene Location: 25702-25899 bp Feature: gene Location: 25930-26469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26260-26338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 26 0-26 338 bp Feature: gene Location: 26497-27018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26503-26785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 503-26 785 bp Feature: domain Description: GIIM Note: maturase Location: 26833-27013 bp Feature: domain Description: GIIM Note: maturase Location: 26 833-27013 bp Feature: gene Location: 27117-27296 bp Feature: gene Location: 27406-27594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)