myRT

myRT report for GCA_002927665.1_ASM292766v1

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Seq: PIIQ01000108.1 Escherichia coli strain F_12_GNB_311 12-GNB-311_S46_L001_R1_001_(paired)_contig_108, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIQ01000021.1 Escherichia coli strain F_12_GNB_311 12-GNB-311_S46_L001_R1_001_(paired)_contig_21, whole genome shotgun sequence (59633 bp)
Overview 1 RT 1: 41848-45730 bp Neighborhood of RT #1 [41848, 45735] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 41848-42564 bp Feature: domain Description: rph Location: 41851-42559 bp Feature: domain Description: rph Location: 41851-42 559 bp Feature: gene Location: 42615-43271 bp Feature: domain Description: pyrE Location: 42633-43266 bp Feature: domain Description: pyrE Location: 42 633-432 66 bp Feature: gene Location: 43569-44528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43704-44253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43704-442 53 bp Feature: gene Location: 44574-45170 bp Feature: domain Description: slmA Location: 44580-45156 bp Feature: domain Description: slmA Location: 44580-45156 bp Feature: gene Location: 45277-45735 bp Feature: domain Description: dut Location: 45283-45730 bp Feature: domain Description: dut Location: 452 83-45730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIQ01000034.1 Escherichia coli strain F_12_GNB_311 12-GNB-311_S46_L001_R1_001_(paired)_contig_34, whole genome shotgun sequence (32768 bp)
Overview 1 RT 1: 5141-8206 bp Neighborhood of RT #1 [5141, 8206] RVT-GII GIIM RVT-GII Feature: gene Location: 5141-5311 bp Feature: gene Location: 5449-5628 bp Feature: gene Location: 5727-6248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5733-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573 3 -6015 bp Feature: domain Description: GIIM Note: maturase Location: 6063-6243 bp Feature: domain Description: GIIM Note: maturase Location: 6063 -6243 bp Feature: gene Location: 6276-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6606-6684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6606-6684 bp Feature: gene Location: 6846-7043 bp Feature: gene Location: 7301-8206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIQ01000052.1 Escherichia coli strain F_12_GNB_311 12-GNB-311_S46_L001_R1_001_(paired)_contig_52, whole genome shotgun sequence (52670 bp)
Overview 1 RT 1: 27282-31253 bp Neighborhood of RT #1 [27282, 31258] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 27282-27617 bp Feature: gene Location: 28070-28279 bp Feature: gene Location: 28414-30315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28681-29512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28681-29512 bp Feature: domain Description: Intron_maturas2 Location: 29626-29884 bp Feature: domain Description: Intron_maturas2 Location: 29626-29884 bp Feature: domain Description: HNHc Note: nucleases Location: 30058-30220 bp Feature: domain Description: HNHc Note: nucleases Location: 30058-30220 bp Feature: gene Location: 30510-30962 bp Feature: domain Description: PRK13732 Location: 30516-30960 bp Feature: domain Description: PRK13732 Location: 30516-30960 bp Feature: gene Location: 31025-31258 bp Feature: domain Description: DUF905 Location: 31055-31253 bp Feature: domain Description: DUF905 Location: 31055-31253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)