myRT

myRT report for GCA_002927695.1_ASM292769v1

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Seq: PIIW01000024.1 Escherichia coli strain F_N13_1_3 N13-1-3_S23_L001_R1_001_(paired)_contig_24, whole genome shotgun sequence (36008 bp)
Overview 1 RT 1: 27274-31245 bp Neighborhood of RT #1 [27274, 31250] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 27274-27609 bp Feature: gene Location: 28062-28271 bp Feature: gene Location: 28406-30307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28673-29504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28673-29504 bp Feature: domain Description: Intron_maturas2 Location: 29618-29876 bp Feature: domain Description: Intron_maturas2 Location: 2961 8-29876 bp Feature: domain Description: HNHc Note: nucleases Location: 30050-30212 bp Feature: domain Description: HNHc Note: nucleases Location: 30050-3021 2 bp Feature: gene Location: 30502-30954 bp Feature: domain Description: PRK13732 Location: 30508-30952 bp Feature: domain Description: PRK1 3732 Location: 30508-30952 bp Feature: gene Location: 31017-31250 bp Feature: domain Description: DUF905 Location: 31047-31245 bp Feature: domain Description: DUF905 Location: 31 047-31 245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PIIW01000026.1 Escherichia coli strain F_N13_1_3 N13-1-3_S23_L001_R1_001_(paired)_contig_26, whole genome shotgun sequence (54331 bp)
Overview 1 RT 1: 25716-28781 bp Neighborhood of RT #1 [25716, 28781] RVT-GII GIIM RVT-GII Feature: gene Location: 25716-25886 bp Feature: gene Location: 26024-26203 bp Feature: gene Location: 26302-26823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26308-26590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6308-2 6590 bp Feature: domain Description: GIIM Note: maturase Location: 26638-26818 bp Feature: domain Description: GIIM Note: maturase Location: 2 6638-2 6818 bp Feature: gene Location: 26851-27390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27181-27259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7181-2 72 59 bp Feature: gene Location: 27421-27618 bp Feature: gene Location: 27876-28781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIW01000050.1 Escherichia coli strain F_N13_1_3 N13-1-3_S23_L001_R1_001_(paired)_contig_50, whole genome shotgun sequence (44248 bp)
Overview 1 RT 1: 27299-31181 bp Neighborhood of RT #1 [27299, 31186] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27299-28015 bp Feature: domain Description: rph Location: 27302-28010 bp Feature: domain Description: rph Location: 273 02-28010 bp Feature: gene Location: 28066-28722 bp Feature: domain Description: pyrE Location: 28084-28717 bp Feature: domain Description: pyrE Location: 28084-28717 bp Feature: gene Location: 29020-29979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29155-29704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29155-29704 bp Feature: gene Location: 30025-30621 bp Feature: domain Description: slmA Location: 30031-30607 bp Feature: domain Description: slmA Location: 3 003 1-3 0607 bp Feature: gene Location: 30728-31186 bp Feature: domain Description: dut Location: 30734-31181 bp Feature: domain Description: dut Location: 3 073 4-3 1181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIW01000071.1 Escherichia coli strain F_N13_1_3 N13-1-3_S23_L001_R1_001_(paired)_contig_71, whole genome shotgun sequence (27979 bp)
Overview 1 RT 1: 21707-25689 bp Neighborhood of RT #1 [21707, 25715] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 21707-22738 bp Feature: domain Description: Asparaginase_2 Location: 21797-22730 bp Feature: domain Description: Asparaginase_2 Location: 21797-22730 bp Feature: gene Location: 23065-23214 bp Feature: gene Location: 23262-23708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23568-23670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23568-23670 bp Feature: gene Location: 23930-24301 bp Feature: gene Location: 24354-25715 bp Feature: domain Description: DcuC Location: 24357-25689 bp Feature: domain Description: DcuC Location: 24 357-25689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)