myRT

myRT report for GCA_002927715.1_ASM292771v1

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Seq: PIIX01000020.1 Escherichia coli strain F_QUC093 QUC093_S6_L001_R1_001_(paired)_contig_20, whole genome shotgun sequence (42047 bp)
Overview 1 RT 1: 27332-31214 bp Neighborhood of RT #1 [27332, 31219] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27332-28048 bp Feature: domain Description: rph Location: 27335-28043 bp Feature: domain Description: rph Location: 27335-28043 bp Feature: gene Location: 28099-28755 bp Feature: domain Description: pyrE Location: 28117-28750 bp Feature: domain Description: pyrE Location: 281 1 7-28750 bp Feature: gene Location: 29053-30012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29188-29737 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 291 88-29737 bp Feature: gene Location: 30058-30654 bp Feature: domain Description: slmA Location: 30064-30640 bp Feature: domain Description: slmA Location: 30064-30640 bp Feature: gene Location: 30761-31219 bp Feature: domain Description: dut Location: 30767-31214 bp Feature: domain Description: dut Location: 30767-31 21 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIX01000035.1 Escherichia coli strain F_QUC093 QUC093_S6_L001_R1_001_(paired)_contig_35, whole genome shotgun sequence (9151 bp)
Overview 1 RT 1: 3-3741 bp Neighborhood of RT #1 [3, 3746] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-224 bp Feature: gene Location: 558-767 bp Feature: gene Location: 902-2803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-2000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-2 000 bp Feature: domain Description: Intron_maturas2 Location: 2114-2372 bp Feature: domain Description: Intron_maturas2 Location: 2 114-2 372 bp Feature: domain Description: HNHc Note: nucleases Location: 2546-2708 bp Feature: domain Description: HNHc Note: nucleases Location: 2 546-2 708 bp Feature: gene Location: 2998-3450 bp Feature: domain Description: PRK13732 Location: 3004-3448 bp Feature: domain Description: PRK13732 Location: 3004-3448 bp Feature: gene Location: 3513-3746 bp Feature: domain Description: DUF905 Location: 3543-3741 bp Feature: domain Description: DUF905 Location: 3543-3741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PIIX01000048.1 Escherichia coli strain F_QUC093 QUC093_S6_L001_R1_001_(paired)_contig_48, whole genome shotgun sequence (47095 bp)
Overview 1 RT 1: 19468-22533 bp Neighborhood of RT #1 [19468, 22533] RVT-GII GIIM RVT-GII Feature: gene Location: 19468-19638 bp Feature: gene Location: 19776-19955 bp Feature: gene Location: 20054-20575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20060-20342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20060-203 42 bp Feature: domain Description: GIIM Note: maturase Location: 20390-20570 bp Feature: domain Description: GIIM Note: maturase Location: 203 90-20570 bp Feature: gene Location: 20603-21142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20933-21011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2093 3 -21011 bp Feature: gene Location: 21173-21370 bp Feature: gene Location: 21628-22533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIX01000050.1 Escherichia coli strain F_QUC093 QUC093_S6_L001_R1_001_(paired)_contig_50, whole genome shotgun sequence (11574 bp)
Overview 1 RT 1: 74-3917 bp Neighborhood of RT #1 [74, 3970] InsE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 74-385 bp Feature: domain Description: InsE Location: 77-368 bp Feature: domain Description: InsE Location: 77-368 bp Feature: gene Location: 409-798 bp Feature: gene Location: 1429-2952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1702-2434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1702-24 34 bp Feature: domain Description: GIIM Note: maturase Location: 2509-2707 bp Feature: domain Description: GIIM Note: maturase Location: 2509-2707 bp Feature: gene Location: 3129-3515 bp Feature: domain Description: PHA02517 Location: 3132-3513 bp Feature: domain Description: PHA02517 Location: 3132-3513 bp Feature: gene Location: 3620-3970 bp Feature: domain Description: InsE Location: 3629-3917 bp Feature: domain Description: InsE Location: 3629-3917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)