myRT

myRT report for GCA_002927735.1_ASM292773v1

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Seq: PIIU01000038.1 Escherichia coli strain F_GNB_2838 GNB-2838_S28_L001_R1_001_(paired)_contig_38, whole genome shotgun sequence (59083 bp)
Overview 1 RT 1: 41560-45442 bp Neighborhood of RT #1 [41560, 45447] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 41560-42276 bp Feature: domain Description: rph Location: 41563-42271 bp Feature: domain Description: rph Location: 41 563-42271 bp Feature: gene Location: 42327-42983 bp Feature: domain Description: pyrE Location: 42345-42978 bp Feature: domain Description: pyrE Location: 42345-42978 bp Feature: gene Location: 43281-44240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43416-43965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4341 6-43965 bp Feature: gene Location: 44286-44882 bp Feature: domain Description: slmA Location: 44292-44868 bp Feature: domain Description: slmA Location: 44292-44868 bp Feature: gene Location: 44989-45447 bp Feature: domain Description: dut Location: 44995-45442 bp Feature: domain Description: dut Location: 44995-45442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PIIU01000056.1 Escherichia coli strain F_GNB_2838 GNB-2838_S28_L001_R1_001_(paired)_contig_56, whole genome shotgun sequence (48588 bp)
Overview 1 RT 1: 45080-48388 bp Neighborhood of RT #1 [45080, 48585] prfC PRK10597 RVT-Retrons Feature: gene Location: 45080-46666 bp Feature: domain Description: prfC Location: 45098-46664 bp Feature: domain Description: prfC Location: 45098-46664 bp Feature: gene Location: 46886-47146 bp Feature: domain Description: PRK10597 Location: 46889-47129 bp Feature: domain Description: PRK10597 Location: 46889-4712 9 bp Feature: gene Location: 47506-48585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47797-48388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47797-48388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons

Seq: PIIU01000007.1 Escherichia coli strain F_GNB_2838 GNB-2838_S28_L001_R1_001_(paired)_contig_7, whole genome shotgun sequence (47344 bp)
Overview 1 RT 1: 15289-18344 bp Neighborhood of RT #1 [15289, 18344] RVT-GII RVT-GII GIIM Feature: gene Location: 15289-16194 bp Feature: gene Location: 16452-16649 bp Feature: gene Location: 16680-17219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17010-17088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17010-17088 bp Feature: gene Location: 17247-17768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17253-17535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17253 -1753 5 bp Feature: domain Description: GIIM Note: maturase Location: 17583-17763 bp Feature: domain Description: GIIM Note: maturase Location: 17583 -17763 bp Feature: gene Location: 17867-18046 bp Feature: gene Location: 18156-18344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)