myRT

myRT report for GCA_002927755.1_ASM292775v1

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Seq: PIIV01000175.1 Escherichia coli strain F_GNB_3697 GNB-3697_S34_L001_R1_001_(paired)_contig_158, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIIV01000069.1 Escherichia coli strain F_GNB_3697 GNB-3697_S34_L001_R1_001_(paired)_contig_18, whole genome shotgun sequence (25653 bp)
Overview 1 RT 1: 9740-13622 bp Neighborhood of RT #1 [9740, 13627] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9740-10198 bp Feature: domain Description: dut Location: 9746-10193 bp Feature: domain Description: dut Location: 9746-10193 bp Feature: gene Location: 10305-10901 bp Feature: domain Description: slmA Location: 10311-10887 bp Feature: domain Description: slmA Location: 10311-10887 bp Feature: gene Location: 10947-11906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11082-11631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11082 -11631 bp Feature: gene Location: 12204-12860 bp Feature: domain Description: pyrE Location: 12222-12855 bp Feature: domain Description: pyrE Location: 12 2 2 2 -12 855 bp Feature: gene Location: 12911-13627 bp Feature: domain Description: rph Location: 12914-13622 bp Feature: domain Description: rph Location: 12 914-1362 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: PIIV01000130.1 Escherichia coli strain F_GNB_3697 GNB-3697_S34_L001_R1_001_(paired)_contig_224, whole genome shotgun sequence (6245 bp)
Overview 1 RT 1: 258-4240 bp Neighborhood of RT #1 [258, 4266] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 258-1289 bp Feature: domain Description: Asparaginase_2 Location: 348-1281 bp Feature: domain Description: Asparaginase_2 Location: 3 48-1281 bp Feature: gene Location: 1616-1765 bp Feature: gene Location: 1813-2259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119-2221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119-2221 bp Feature: gene Location: 2481-2852 bp Feature: gene Location: 2905-4266 bp Feature: domain Description: DcuC Location: 2908-4240 bp Feature: domain Description: DcuC Location: 2908-4240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), DcuC (TIGR00771)