myRT

myRT report for GCA_002929195.1_ASM292919v1

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Seq: PITO01000126.1 Escherichia coli strain 9CSI I Contig_126, whole genome shotgun sequence (2934 bp)
Overview 1 RT 1: 366-2932 bp Neighborhood of RT #1 [366, 2931] RVT-GII Intron_maturas2 HNHc PRK13732 Feature: gene Location: 366-575 bp Feature: gene Location: 710-2611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977-1 808 bp Feature: domain Description: Intron_maturas2 Location: 1922-2180 bp Feature: domain Description: Intron_maturas2 Location: 1 922-21 80 bp Feature: domain Description: HNHc Note: nucleases Location: 2354-2516 bp Feature: domain Description: HNHc Note: nucleases Location: 2354-251 6 bp Feature: gene Location: 2806-2931 bp Feature: domain Description: PRK13732 Location: 2809-2932 bp Feature: domain Description: PRK1 3732 Location: 2809-2932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PITO01000228.1 Escherichia coli strain 9CSI I Contig_228, whole genome shotgun sequence (3305 bp)
Overview 1 RT 1: 454-3142 bp Neighborhood of RT #1 [454, 3198] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 454-759 bp Feature: gene Location: 1312-1452 bp Feature: gene Location: 1474-3198 bp Feature: RT Description: RVT_N Location: 1531-1768 bp Feature: RT Description: RVT_N Location: 1531-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819-2467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819-2 467 bp Feature: domain Description: YkfC Location: 2599-2755 bp Feature: domain Description: YkfC Location: 2 599-2 755 bp Feature: domain Description: HNHc Note: nucleases Location: 2983-3142 bp Feature: domain Description: HNHc Note: nucleases Location: 2 983-3142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: PITO01000245.1 Escherichia coli strain 9CSI I Contig_245, whole genome shotgun sequence (124293 bp)
Overview 1 RT 1: 32721-36603 bp Neighborhood of RT #1 [32721, 36608] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 32721-33179 bp Feature: domain Description: dut Location: 32727-33174 bp Feature: domain Description: dut Location: 3 2727-3 3 174 bp Feature: gene Location: 33286-33882 bp Feature: domain Description: slmA Location: 33292-33868 bp Feature: domain Description: slmA Location: 3 3 292-3 3 868 bp Feature: gene Location: 33928-34887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34063-34612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 4063 -3 4612 bp Feature: gene Location: 35185-35841 bp Feature: domain Description: pyrE Location: 35203-35836 bp Feature: domain Description: pyrE Location: 3 5203 -3 583 6 bp Feature: gene Location: 35892-36608 bp Feature: domain Description: rph Location: 35895-36603 bp Feature: domain Description: rph Location: 3 5895-3 6603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)