myRT

myRT report for GCA_002930045.1_ASM293004v1

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Seq: PKNM01000111.1 Vibrio jasicida strain 270813B scaffold172_cov111, whole genome shotgun sequence (225085 bp)
Overview 1 RT 1: 148327-151892 bp Neighborhood of RT #1 [148327, 151892] DUF1852 RVT-UG17 SLATT_5 Feature: gene Location: 148327-149301 bp Feature: domain Description: DUF1852 Location: 148330-149290 bp Feature: domain Description: DUF1 852 Location: 1 48330-1 49290 bp Feature: gene Location: 149364-149519 bp Feature: gene Location: 149764-151098 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 149986-150568 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 49986-1 50568 bp Feature: gene Location: 151114-151599 bp Feature: domain Description: SLATT_5 Location: 151123-151588 bp Feature: domain Description: SLATT_5 Location: 1 51 1 23-1 51 588 bp Feature: gene Location: 151662-151892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1852 (pfam08908), RVT-UG17, SLATT_5 (pfam18160)

Seq: PKNM01000155.1 Vibrio jasicida strain 270813B scaffold276_cov87, whole genome shotgun sequence (10657 bp)
Overview 1 RT 1: 1161-6225 bp Neighborhood of RT #1 [1161, 6311] SR_Res_par DUF723 RVT_N RVT-GII GIIM SMC_prok_B DUF4041 T5orf172 Feature: gene Location: 1161-1799 bp Feature: domain Description: SR_Res_par Location: 1182-1614 bp Feature: domain Description: SR_Res_par Location: 1182 -1614 bp Feature: gene Location: 1793-2134 bp Feature: domain Description: DUF723 Location: 1841-2000 bp Feature: domain Description: DUF72 3 Location: 1841-2 000 bp Feature: gene Location: 2313-3785 bp Feature: domain Description: RVT_N Location: 2361-2604 bp Feature: domain Description: RVT_N Location: 2 361-2 604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649-3276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 649-32 76 bp Feature: domain Description: GIIM Note: maturase Location: 3336-3561 bp Feature: domain Description: GIIM Note: maturase Location: 3336-3561 bp Feature: gene Location: 4551-4865 bp Feature: gene Location: 4869-6311 bp Feature: domain Description: SMC_prok_B Location: 4959-5253 bp Feature: domain Description: SMC_prok_B Location: 4959-52 53 bp Feature: domain Description: DUF4041 Location: 5472-5637 bp Feature: domain Description: DUF4041 Location: 5472 -5637 bp Feature: domain Description: T5orf172 Location: 5985-6225 bp Feature: domain Description: T5orf172 Location: 5985-62 2 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), DUF723 (pfam05265), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SMC_prok_B (TIGR02168), DUF4041 (pfam13250), T5orf172 (smart00974)

Seq: PKNM01000175.1 Vibrio jasicida strain 270813B scaffold329_cov87, whole genome shotgun sequence (4016 bp)
Overview 1 RT 1: 844-3999 bp Neighborhood of RT #1 [844, 4013] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 844-1773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 946-1525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 946-1525 bp Feature: gene Location: 1760-3457 bp Feature: domain Description: COG3950 Location: 2015-3260 bp Feature: domain Description: COG3 950 Location: 2015-3 260 bp Feature: gene Location: 3462-4013 bp Feature: domain Description: TIGR02646 Location: 3573-3999 bp Feature: domain Description: TIGR02646 Location: 3 573 -3 999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: PKNM01000199.1 Vibrio jasicida strain 270813B scaffold394_cov213, whole genome shotgun sequence (15294 bp)
Overview 1 RT 1: 9667-15293 bp Neighborhood of RT #1 [9667, 15293] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like Feature: gene Location: 9667-12201 bp Feature: domain Description: Big_1 Location: 11062-11245 bp Feature: domain Description: Big_1 Location: 11062-1124 5 bp Feature: domain Description: Big_1 Location: 11368-11518 bp Feature: domain Description: Big_1 Location: 11368-11518 bp Feature: domain Description: DUF1566 Location: 11944-12190 bp Feature: domain Description: DUF1566 Location: 1194 4 -12190 bp Feature: gene Location: 12288-12800 bp Feature: gene Location: 13090-14391 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13300-14002 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13300-14 002 bp Feature: gene Location: 14344-14751 bp Feature: domain Description: Avd_like Location: 14398-14725 bp Feature: domain Description: Avd_like Location: 14 398-14 725 bp Feature: gene Location: 14799-15293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)