myRT

myRT report for GCA_002930295.1_ASM293029v1

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Seq: PSNF01000022.1 Escherichia coli strain DE1 scaffold_21, whole genome shotgun sequence (88817 bp)
Overview 1 RT 1: 18923-23643 bp Neighborhood of RT #1 [18923, 23906] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 18923-19096 bp Feature: gene Location: 19130-19438 bp Feature: gene Location: 19425-20588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19539-20226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9539-20226 bp Feature: gene Location: 20914-21477 bp Feature: domain Description: Inovirus_Gp2 Location: 20971-21415 bp Feature: domain Description: Inovirus_Gp2 Location: 20971 -21 41 5 bp Feature: gene Location: 22455-23906 bp Feature: domain Description: DUF3987 Location: 22566-23643 bp Feature: domain Description: DUF3987 Location: 22566-23643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: PSNF01000024.1 Escherichia coli strain DE1 scaffold_23, whole genome shotgun sequence (87499 bp)
Overview 1 RT 1: 33100-39545 bp Neighborhood of RT #1 [33100, 39736] INT_Rci_Hp1_C INT_Rci_Hp1_C RVT-Retrons AAA_21 HTH_36 Feature: gene Location: 33100-34557 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33478-33676 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33478-33676 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33961-34432 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33961-34432 bp Feature: gene Location: 34569-35147 bp Feature: gene Location: 35356-36459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35506-36058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35506-36058 bp Feature: gene Location: 36626-38743 bp Feature: domain Description: AAA_21 Location: 36701-37610 bp Feature: domain Description: AAA_2 1 Location: 36701-37610 bp Feature: gene Location: 39203-39736 bp Feature: domain Description: HTH_36 Location: 39389-39545 bp Feature: domain Description: HTH_36 Location: 39389-39545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-Retrons, AAA_21 (pfam13304), HTH_36 (pfam13730)

Seq: PSNF01000057.1 Escherichia coli strain DE1 scaffold_56, whole genome shotgun sequence (15514 bp)
Overview 1 RT 1: 12395-15512 bp Neighborhood of RT #1 [12395, 15511] RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 12395-12532 bp Feature: gene Location: 12622-12891 bp Feature: gene Location: 12916-14262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13204-13822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 204-13 822 bp Feature: domain Description: GIIM Note: maturase Location: 13870-14101 bp Feature: domain Description: GIIM Note: maturase Location: 13 870-14101 bp Feature: gene Location: 14416-14955 bp Feature: domain Description: RAYT Location: 14494-14857 bp Feature: domain Description: RAYT Location: 14494-14857 bp Feature: gene Location: 15302-15511 bp Feature: domain Description: PRK11447 Location: 15305-15512 bp Feature: domain Description: PRK11447 Location: 153 05-15512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)