myRT

myRT report for GCA_002933545.1_ASM293354v1

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Seq: PSZB01000001.1 Nocardia nova strain MDA3397 NODE_1_length_639203_cov_22.9161, whole genome shotgun sequence (639203 bp)
Overview 1 RT 1: 630499-634920 bp Neighborhood of RT #1 [630499, 634991] TetR_N TetR_C_24 rve_2 RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 630499-631113 bp Feature: domain Description: TetR_N Location: 630553-630688 bp Feature: domain Description: TetR_N Location: 630553-630688 bp Feature: domain Description: TetR_C_24 Location: 630751-631087 bp Feature: domain Description: TetR_C_24 Location: 630751 -631 087 bp Feature: gene Location: 631638-631787 bp Feature: domain Description: rve_2 Location: 631647-631749 bp Feature: domain Description: rve_2 Location: 631 647-631 749 bp Feature: gene Location: 632223-633470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632337-633024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632337-633024 bp Feature: domain Description: GIIM Note: maturase Location: 633096-633294 bp Feature: domain Description: GIIM Note: maturase Location: 633096-633294 bp Feature: gene Location: 634198-634659 bp Feature: domain Description: PHA02517 Location: 634255-634585 bp Feature: domain Description: PHA0251 7 Location: 634255-634585 bp Feature: gene Location: 634656-634991 bp Feature: domain Description: HTH_Tnp_1 Location: 634698-634920 bp Feature: domain Description: HTH_Tnp_1 Location: 634698-634920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_24 (pfam17932), rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)

Seq: PSZB01000062.1 Nocardia nova strain MDA3397 NODE_63_length_1268_cov_0.263804, whole genome shotgun sequence (1268 bp)
Overview 1 RT 1: 1-1255 bp Neighborhood of RT #1 [1, 1266] RVT-CRISPR-like RT_nLTR_like Feature: gene Location: 1-966 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 55-166 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 55-166 bp Feature: gene Location: 1042-1266 bp Feature: domain Description: RT_nLTR_like Location: 1111-1255 bp Feature: domain Description: RT_nLTR_like Location: 1111-12 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RT_nLTR_like (cd01650)

Seq: PSZB01000068.1 Nocardia nova strain MDA3397 NODE_69_length_891_cov_0.274869, whole genome shotgun sequence (831 bp)
Overview 1 RT 1: 3-483 bp Neighborhood of RT #1 [3, 830] RVT-CRISPR-like Feature: gene Location: 3-830 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-483 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR