myRT

myRT report for GCA_002934005.1_ASM293400v1

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Seq: PGEM01000013.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_12, whole genome shotgun sequence (42429 bp)
Overview 1 RT 1: 40954-42186 bp Neighborhood of RT #1 [40954, 42338] InsQ RVT-CRISPR cas1_PREFRAN Feature: gene Location: 40954-41100 bp Feature: gene Location: 41199-41570 bp Feature: domain Description: InsQ Location: 41202-41460 bp Feature: domain Description: InsQ Location: 41 202-41 460 bp Feature: gene Location: 41682-42338 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 41688-41886 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 41 688-41 886 bp Feature: domain Description: cas1_PREFRAN Location: 41895-42186 bp Feature: domain Description: cas1 _PREFRAN Location: 41 895-421 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-CRISPR, cas1_PREFRAN (TIGR04329)

Seq: PGEM01000147.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_149, whole genome shotgun sequence (26984 bp)
Overview 1 RT 1: 8834-16204 bp Neighborhood of RT #1 [8834, 16204] lpxB Dcm RVT-AbiA thiamin_ThiO thiG Feature: gene Location: 8834-9991 bp Feature: domain Description: lpxB Location: 8837-9983 bp Feature: domain Description: lpxB Location: 8837-9983 bp Feature: gene Location: 10004-11251 bp Feature: domain Description: Dcm Location: 10019-11120 bp Feature: domain Description: Dcm Location: 10019-1112 0 bp Feature: gene Location: 11562-13508 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 12033-12546 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 12 033-12 546 bp Feature: gene Location: 13690-15690 bp Feature: domain Description: thiamin_ThiO Location: 13747-14737 bp Feature: domain Description: thiamin_ThiO Location: 13747-14737 bp Feature: domain Description: thiG Location: 14905-15676 bp Feature: domain Description: thiG Location: 14905-15676 bp Feature: gene Location: 15794-16204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lpxB (TIGR00215), Dcm (COG0270), RVT-AbiA, thiamin_ThiO (TIGR02352), thiG (PRK00208)

Seq: PGEM01000173.1 Cuspidothrix issatschenkoi CHARLIE-1 contig_175, whole genome shotgun sequence (2237 bp)
Overview 1 RT 1: 217-2237 bp Neighborhood of RT #1 [217, 2236] RVT-UNC RVT_thumb RVT_connect RNase_H PRK13757 Feature: gene Location: 217-1935 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 700-919 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 700-919 bp Feature: domain Description: RVT_thumb Location: 982-1168 bp Feature: domain Description: RVT_thumb Location: 982-1168 bp Feature: domain Description: RVT_connect Location: 1210-1498 bp Feature: domain Description: RVT_connect Location: 1210-1498 bp Feature: domain Description: RNase_H Location: 1564-1909 bp Feature: domain Description: RNase_H Location: 1564-1909 bp Feature: gene Location: 2042-2236 bp Feature: domain Description: PRK13757 Location: 2099-2237 bp Feature: domain Description: PRK13 757 Location: 2099-223 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-Retrons/RVT-DGRs(RVT-UNC), RVT_thumb (pfam06817), RVT_connect (pfam06815), RNase_H (pfam00075), PRK13757 (type A chloramphenicol O-acetyltransferase)