myRT

myRT report for GCA_002936495.2_ASM293649v2

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Seq: PTGL02000064.1 Escherichia coli strain CRK0375 CRK0375_NODE_27.ctg_1, whole genome shotgun sequence (61051 bp)
Overview 1 RT 1: 54554-58495 bp Neighborhood of RT #1 [54554, 58495] RVT-Retrons Feature: gene Location: 54554-54793 bp Feature: gene Location: 55100-55276 bp Feature: gene Location: 55349-57121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55508-56126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55508-561 26 bp Feature: gene Location: 57143-57310 bp Feature: gene Location: 57356-58495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PTGL02000088.1 Escherichia coli strain CRK0375 CRK0375_NODE_42.ctg_1, whole genome shotgun sequence (22500 bp)
Overview 1 RT 1: 17767-22488 bp Neighborhood of RT #1 [17767, 22499] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 17767-19353 bp Feature: domain Description: prfC Location: 17785-19351 bp Feature: domain Description: prfC Location: 17785-19351 bp Feature: gene Location: 19573-19833 bp Feature: domain Description: PRK10597 Location: 19576-19816 bp Feature: domain Description: PRK10597 Location: 19576-19816 bp Feature: gene Location: 20193-21797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20484-21075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0484-2 1075 bp Feature: domain Description: TIR_2 Location: 21402-21690 bp Feature: domain Description: TIR_2 Location: 2 1402 -2 1690 bp Feature: gene Location: 22242-22499 bp Feature: domain Description: Caudo_TAP Location: 22245-22488 bp Feature: domain Description: Caudo_TAP Location: 2 2 2 45-2 2 488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: PTGL02000043.1 Escherichia coli strain CRK0375 CRK0375_NODE_68.ctg_1, whole genome shotgun sequence (2585 bp)
Overview 1 RT 1: 2-2060 bp Neighborhood of RT #1 [2, 2305] RVT-GII GIIM Feature: gene Location: 2-151 bp Feature: gene Location: 782-2305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1787 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2060 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)