myRT

myRT report for GCA_002937075.1_ASM293707v1

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Seq: NHSJ01000047.1 Rhodoblastus sphagnicola strain DSM 16996 scaffold0047, whole genome shotgun sequence (6528 bp)
Overview 1 RT 1: 132-4034 bp Neighborhood of RT #1 [132, 4034] DUF772 DDE_Tnp_1 RVT-GII Feature: gene Location: 132-1397 bp Feature: domain Description: DUF772 Location: 306-522 bp Feature: domain Description: DUF772 Location: 306-522 bp Feature: domain Description: DDE_Tnp_1 Location: 798-1206 bp Feature: domain Description: DDE_Tnp_1 Location: 798-1 206 bp Feature: gene Location: 1435-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1723-2284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 723-2284 bp Feature: gene Location: 2435-2800 bp Feature: gene Location: 2811-4034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: NHSJ01000067.1 Rhodoblastus sphagnicola strain DSM 16996 scaffold0067, whole genome shotgun sequence (16408 bp)
Overview 1 RT 1: 3162-6993 bp 2 RT 2: 10230-12467 bp Neighborhood of RT #1 [3162, 6993] InsE PHA02517 RVT-GII KOG4768 PHA02517 Neighborhood of RT #2 [10230, 12467] BDS1 RVT-GII Feature: gene Location: 3162-3533 bp Feature: domain Description: InsE Location: 3279-3411 bp Feature: domain Description: InsE Location: 32 79-3411 bp Feature: gene Location: 3582-3977 bp Feature: domain Description: PHA02517 Location: 3684-3945 bp Feature: domain Description: PHA02 517 Location: 3684-3945 bp Feature: gene Location: 4393-6081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4867-5626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4867-562 6 bp Feature: domain Description: KOG4768 Location: 5764-5926 bp Feature: domain Description: KOG4768 Location: 5764-592 6 bp Feature: gene Location: 6175-6711 bp Feature: domain Description: PHA02517 Location: 6184-6547 bp Feature: domain Description: PHA02 517 Location: 6184-6547 bp Feature: gene Location: 6757-6993 bp Feature: gene Location: 10230-10898 bp Feature: domain Description: BDS1 Location: 10233-10896 bp Feature: domain Description: BDS1 Location: 102 33-10896 bp Feature: gene Location: 11016-11456 bp Feature: gene Location: 11573-11806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11576-11783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11576-11783 bp Feature: gene Location: 11811-12245 bp Feature: gene Location: 12279-12467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), BDS1 (COG2015)

Seq: NHSJ01000105.1 Rhodoblastus sphagnicola strain DSM 16996 scaffold0105, whole genome shotgun sequence (20483 bp)
Overview 1 RT 1: 166-2876 bp Neighborhood of RT #1 [166, 2887] HRDC RVT-DGRs YfmG YfmG Feature: gene Location: 166-663 bp Feature: domain Description: HRDC Location: 412-610 bp Feature: domain Description: HRDC Location: 412-610 bp Feature: gene Location: 653-1672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 863-1454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 863 -1454 bp Feature: gene Location: 1717-1968 bp Feature: domain Description: YfmG Location: 1720-1828 bp Feature: domain Description: YfmG Location: 1720-1828 bp Feature: gene Location: 1985-2887 bp Feature: domain Description: YfmG Location: 2132-2876 bp Feature: domain Description: YfmG Location: 213 2-2876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HRDC (smart00341), YfmG (COG1262), RVT-DGRs

Seq: NHSJ01000112.1 Rhodoblastus sphagnicola strain DSM 16996 scaffold0112, whole genome shotgun sequence (50779 bp)
Overview 1 RT 1: 36774-45573 bp Neighborhood of RT #1 [36774, 45611] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM 2A0601 8a0102 Feature: gene Location: 36774-37979 bp Feature: domain Description: Zn_Tnp_IS91 Location: 36807-37080 bp Feature: domain Description: Zn_Tnp_IS91 Location: 36807-37080 bp Feature: domain Description: Y2_Tnp Location: 37206-37764 bp Feature: domain Description: Y2_Tnp Location: 37206-37764 bp Feature: gene Location: 37990-38862 bp Feature: domain Description: Phage_int_SAM_4 Location: 38017-38254 bp Feature: domain Description: Phage_int_SAM_4 Location: 38017-38254 bp Feature: domain Description: INT_IntI_C Location: 38299-38785 bp Feature: domain Description: INT_IntI_C Location: 38299-38785 bp Feature: gene Location: 39467-40858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39812-40430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39812-4 04 30 bp Feature: domain Description: GIIM Note: maturase Location: 40478-40706 bp Feature: domain Description: GIIM Note: maturase Location: 4 04 78-4 0706 bp Feature: gene Location: 41168-44425 bp Feature: domain Description: 2A0601 Location: 41171-44357 bp Feature: domain Description: 2A0601 Location: 4 1171-4 4 357 bp Feature: gene Location: 44433-45611 bp Feature: domain Description: 8a0102 Location: 44733-45573 bp Feature: domain Description: 8a0102 Location: 4 4 733-4 5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388), 2A0601 (TIGR00914), 8a0102 (TIGR00999)