myRT

myRT report for GCA_002941115.1_ASM294111v1

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Seq: PTMD01000036.1 Escherichia coli strain YH17190 scaffold36, whole genome shotgun sequence (32462 bp)
Overview 1 RT 1: 19922-24121 bp Neighborhood of RT #1 [19922, 24126] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII Fimbrial Feature: gene Location: 19922-20185 bp Feature: domain Description: LZ_Tnp_IS66 Location: 20102-20180 bp Feature: domain Description: LZ_Tnp_IS66 Location: 201 02-201 80 bp Feature: gene Location: 20261-21496 bp Feature: domain Description: zf-IS66 Location: 20336-20468 bp Feature: domain Description: zf-IS66 Location: 20336-20468 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20513-21347 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2051 3-21 347 bp Feature: gene Location: 21556-21921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21571-21703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 571 -21 703 bp Feature: gene Location: 22596-23585 bp Feature: gene Location: 23608-24126 bp Feature: domain Description: Fimbrial Location: 23680-24121 bp Feature: domain Description: Fimbrial Location: 23680-241 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, Fimbrial (pfam00419)

Seq: PTMD01000052.1 Escherichia coli strain YH17190 scaffold52, whole genome shotgun sequence (11467 bp)
Overview 1 RT 1: 79-4863 bp Neighborhood of RT #1 [79, 4895] HTH_38 Tra8 PHA02517 RVT-GII GIIM TraH Feature: gene Location: 79-1230 bp Feature: domain Description: HTH_38 Location: 88-202 bp Feature: domain Description: HTH_38 Location: 88-2 02 bp Feature: domain Description: Tra8 Location: 238-1219 bp Feature: domain Description: Tra8 Location: 2 38-12 19 bp Feature: gene Location: 1361-1786 bp Feature: domain Description: PHA02517 Location: 1385-1721 bp Feature: domain Description: PHA02 517 Location: 1385-172 1 bp Feature: gene Location: 2378-3901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651-3383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 651-3383 bp Feature: domain Description: GIIM Note: maturase Location: 3458-3656 bp Feature: domain Description: GIIM Note: maturase Location: 3458-3656 bp Feature: gene Location: 3988-4173 bp Feature: gene Location: 4446-4895 bp Feature: domain Description: TraH Location: 4545-4863 bp Feature: domain Description: TraH Location: 4545-4863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TraH (pfam06122)