myRT

myRT report for GCA_002941305.1_ASM294130v1

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Seq: PTMN01000110.1 Escherichia coli strain YH17176 scaffold110, whole genome shotgun sequence (2313 bp)
Overview 1 RT 1: 2-1963 bp Neighborhood of RT #1 [2, 2208] RVT-GII GIIM Feature: gene Location: 2-391 bp Feature: gene Location: 685-2208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1 690 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Feature: domain Description: GIIM Note: maturase Location: 1 765-1 963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PTMN01000003.1 Escherichia coli strain YH17176 scaffold3, whole genome shotgun sequence (238235 bp)
Overview 1 RT 1: 66914-74724 bp Neighborhood of RT #1 [66914, 74729] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 66914-69190 bp Feature: domain Description: Phage_GPA Location: 67313-68300 bp Feature: domain Description: Phage_GPA Location: 67313-68300 bp Feature: gene Location: 69252-69512 bp Feature: gene Location: 69678-71222 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 70095-70548 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 70095-70548 bp Feature: gene Location: 71565-71705 bp Feature: gene Location: 71773-72963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71923-72505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7192 3-72 505 bp Feature: gene Location: 72960-73667 bp Feature: gene Location: 73710-74729 bp Feature: domain Description: Q Location: 73713-74724 bp Feature: domain Description: Q Location: 73713-7472 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: PTMN01000054.1 Escherichia coli strain YH17176 scaffold54, whole genome shotgun sequence (19246 bp)
Overview 1 RT 1: 510-3021 bp Neighborhood of RT #1 [510, 3021] RVT-UG17 SLATT_5 Feature: gene Location: 510-647 bp Feature: gene Location: 663-797 bp Feature: gene Location: 905-2275 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1133-1739 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 113 3 -173 9 bp Feature: gene Location: 2253-2804 bp Feature: domain Description: SLATT_5 Location: 2259-2775 bp Feature: domain Description: SLATT_5 Location: 2259-2775 bp Feature: gene Location: 2842-3021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: PTMN01000006.1 Escherichia coli strain YH17176 scaffold6, whole genome shotgun sequence (183976 bp)
Overview 1 RT 1: 49432-53315 bp Neighborhood of RT #1 [49432, 53320] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49432-49890 bp Feature: domain Description: dut Location: 49438-49885 bp Feature: domain Description: dut Location: 4 94 38-4 9885 bp Feature: gene Location: 49997-50593 bp Feature: domain Description: slmA Location: 50003-50579 bp Feature: domain Description: slmA Location: 50003-50579 bp Feature: gene Location: 50639-51598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50774-51323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50774 -51323 bp Feature: gene Location: 51896-52552 bp Feature: domain Description: pyrE Location: 51914-52547 bp Feature: domain Description: pyrE Location: 51914 -5254 7 bp Feature: gene Location: 52604-53320 bp Feature: domain Description: rph Location: 52607-53315 bp Feature: domain Description: rph Location: 52607-53315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)