myRT

myRT report for GCA_002941825.1_ASM294182v1

Download annotations/find similar RTs

Seq: PTMS01000005.1 Escherichia coli strain YH17170 scaffold5, whole genome shotgun sequence (253698 bp)
Overview 1 RT 1: 76-3876 bp Neighborhood of RT #1 [76, 3876] MobA_MobL RVT-Retrons RVT-Retrons HTH_XRE Feature: gene Location: 76-1248 bp Feature: domain Description: MobA_MobL Location: 106-436 bp Feature: domain Description: MobA_MobL Location: 1 06-436 bp Feature: gene Location: 1326-1985 bp Feature: gene Location: 2195-2911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2198-2507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 98-2507 bp Feature: gene Location: 2928-3296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3069-3273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3069-3273 bp Feature: gene Location: 3289-3570 bp Feature: domain Description: HTH_XRE Location: 3304-3469 bp Feature: domain Description: HTH_XRE Location: 3304-3469 bp Feature: gene Location: 3661-3876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), MobA_MobL (pfam03389)

Seq: PTMS01000061.1 Escherichia coli strain YH17170 scaffold61, whole genome shotgun sequence (6478 bp)
Overview 1 RT 1: 228-2701 bp Neighborhood of RT #1 [228, 2706] RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 228-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 97-708 bp Feature: domain Description: GIIM Note: maturase Location: 756-981 bp Feature: domain Description: GIIM Note: maturase Location: 756-981 bp Feature: gene Location: 1326-1544 bp Feature: gene Location: 1675-2706 bp Feature: domain Description: LacI Location: 1717-1852 bp Feature: domain Description: LacI Location: 1717-1852 bp Feature: domain Description: PBP1_GntR Location: 1891-2701 bp Feature: domain Description: PBP1_GntR Location: 1891-2 701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)