myRT

myRT report for GCA_002941885.1_ASM294188v1

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Seq: PTNA01000018.1 Escherichia coli strain YH17160 scaffold18, whole genome shotgun sequence (108519 bp)
Overview 1 RT 1: 76969-82977 bp Neighborhood of RT #1 [76969, 82994] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 76969-78222 bp Feature: domain Description: proA Location: 76996-78187 bp Feature: domain Description: proA Location: 76996-781 87 bp Feature: gene Location: 78577-79761 bp Feature: domain Description: PRK09692 Location: 78583-79738 bp Feature: domain Description: PRK09692 Location: 78583-79738 bp Feature: gene Location: 79754-81382 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 80162-80591 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 801 62-80591 bp Feature: gene Location: 81379-82119 bp Feature: gene Location: 82422-82994 bp Feature: domain Description: Psu Location: 82440-82977 bp Feature: domain Description: Psu Location: 82440-82977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: PTNA01000004.1 Escherichia coli strain YH17160 scaffold4, whole genome shotgun sequence (327932 bp)
Overview 1 RT 1: 212977-217822 bp 2 RT 2: 242837-246853 bp Neighborhood of RT #1 [212977, 217822] DUF3987 Inovirus_Gp2 RVT-GII Neighborhood of RT #2 [242837, 246876] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66_C Feature: gene Location: 212977-214410 bp Feature: domain Description: DUF3987 Location: 213070-214147 bp Feature: domain Description: DUF3987 Location: 2 13070-2 14147 bp Feature: gene Location: 215268-215831 bp Feature: domain Description: Inovirus_Gp2 Location: 215325-215766 bp Feature: domain Description: Inovirus_Gp2 Location: 2 1532 5-2 15766 bp Feature: gene Location: 216157-217320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216271-216958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 162 71-2 16958 bp Feature: gene Location: 217307-217615 bp Feature: gene Location: 217649-217822 bp Feature: gene Location: 242837-243163 bp Feature: domain Description: InsE Location: 242840-243161 bp Feature: domain Description: InsE Location: 2 42 840-2 43161 bp Feature: gene Location: 243163-243642 bp Feature: domain Description: PHA02517 Location: 243223-243577 bp Feature: domain Description: PHA02 517 Location: 2 432 2 3-2 43577 bp Feature: gene Location: 244234-245757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244507-245239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 44507-2 452 39 bp Feature: domain Description: GIIM Note: maturase Location: 245314-245512 bp Feature: domain Description: GIIM Note: maturase Location: 2 45314-2 45512 bp Feature: gene Location: 245922-246326 bp Feature: domain Description: PHA02517 Location: 245925-246315 bp Feature: domain Description: PHA02 517 Location: 2 4592 5-2 46315 bp Feature: gene Location: 246691-246876 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 246742-246853 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 46742 -2 46853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)