myRT

myRT report for GCA_002941945.1_ASM294194v1

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Seq: PTNL01000022.1 Escherichia coli strain YH17146 scaffold22, whole genome shotgun sequence (89841 bp)
Overview 1 RT 1: 60577-64776 bp Neighborhood of RT #1 [60577, 64781] Fimbrial RVT-GII zf-IS66 DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 60577-61095 bp Feature: domain Description: Fimbrial Location: 60649-61090 bp Feature: domain Description: Fimbrial Location: 60649-61 090 bp Feature: gene Location: 61118-62107 bp Feature: gene Location: 62782-63147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62797-62929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62797-62929 bp Feature: gene Location: 63207-64442 bp Feature: domain Description: zf-IS66 Location: 63282-63414 bp Feature: domain Description: zf-IS66 Location: 63282-6341 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 63459-64293 bp Feature: domain Description: DDE_Tnp_IS66 Location: 63459-64293 bp Feature: gene Location: 64518-64781 bp Feature: domain Description: LZ_Tnp_IS66 Location: 64698-64776 bp Feature: domain Description: LZ_Tnp_IS66 Location: 64698-64776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fimbrial (pfam00419), RVT-GII, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007)

Seq: PTNL01000037.1 Escherichia coli strain YH17146 scaffold37, whole genome shotgun sequence (15350 bp)
Overview 1 RT 1: 3882-8666 bp Neighborhood of RT #1 [3882, 8698] HTH_38 Tra8 PHA02517 RVT-GII GIIM TraH Feature: gene Location: 3882-5033 bp Feature: domain Description: HTH_38 Location: 3891-4005 bp Feature: domain Description: HTH_38 Location: 3891-4005 bp Feature: domain Description: Tra8 Location: 4041-5022 bp Feature: domain Description: Tra8 Location: 4041-502 2 bp Feature: gene Location: 5164-5589 bp Feature: domain Description: PHA02517 Location: 5188-5524 bp Feature: domain Description: PHA02 517 Location: 5188-552 4 bp Feature: gene Location: 6181-7704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6454-7186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6454-7186 bp Feature: domain Description: GIIM Note: maturase Location: 7261-7459 bp Feature: domain Description: GIIM Note: maturase Location: 72 61-7459 bp Feature: gene Location: 7791-7976 bp Feature: gene Location: 8249-8698 bp Feature: domain Description: TraH Location: 8348-8666 bp Feature: domain Description: TraH Location: 8348-8666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TraH (pfam06122)