myRT

myRT report for GCA_002942625.1_ASM294262v1

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Seq: PTOI01000055.1 Escherichia coli strain LN_F1_1 NODE_55_length_20610_cov_11.9795, whole genome shotgun sequence (20610 bp)
Overview 1 RT 1: 7039-10160 bp Neighborhood of RT #1 [7039, 10160] PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 7039-7449 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 7111-7423 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 71 1 1 -7423 bp Feature: gene Location: 7726-7926 bp Feature: gene Location: 7952-9400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7955-8396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7955-8396 bp Feature: gene Location: 9456-9659 bp Feature: gene Location: 9987-10160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: PTOI01000087.1 Escherichia coli strain LN_F1_1 NODE_87_length_8408_cov_23.5899, whole genome shotgun sequence (8408 bp)
Overview 1 RT 1: 5388-8408 bp Neighborhood of RT #1 [5388, 8407] RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 5388-5525 bp Feature: gene Location: 5615-5866 bp Feature: gene Location: 5891-7132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6179-6797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6179-6797 bp Feature: domain Description: GIIM Note: maturase Location: 6845-7076 bp Feature: domain Description: GIIM Note: maturase Location: 6845-7076 bp Feature: gene Location: 7312-7929 bp Feature: domain Description: RAYT Location: 7468-7831 bp Feature: domain Description: RAYT Location: 7468-7831 bp Feature: gene Location: 8276-8407 bp Feature: domain Description: PRK11447 Location: 8279-8408 bp Feature: domain Description: PRK11447 Location: 82 79-8408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)

Seq: PTOI01000092.1 Escherichia coli strain LN_F1_1 NODE_92_length_7829_cov_21.7939, whole genome shotgun sequence (7829 bp)
Overview 1 RT 1: 4202-7569 bp Neighborhood of RT #1 [4202, 7634] VRR_NUC PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4202-4483 bp Feature: domain Description: VRR_NUC Location: 4214-4385 bp Feature: domain Description: VRR_NUC Location: 4214-43 85 bp Feature: gene Location: 4546-4899 bp Feature: domain Description: PHA02517 Location: 4549-4894 bp Feature: domain Description: PHA02517 Location: 4549-4894 bp Feature: gene Location: 5094-6617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5367-6099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 67-6099 bp Feature: domain Description: GIIM Note: maturase Location: 6174-6372 bp Feature: domain Description: GIIM Note: maturase Location: 6174-63 72 bp Feature: gene Location: 6571-6996 bp Feature: gene Location: 7209-7634 bp Feature: domain Description: PHA02517 Location: 7233-7569 bp Feature: domain Description: PHA02517 Location: 723 3 -7569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VRR_NUC (smart00990), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)