myRT

myRT report for GCA_002942645.1_ASM294264v1

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Seq: PTOJ01000033.1 Escherichia coli strain JL_F20_1 NODE_33_length_44664_cov_31.029, whole genome shotgun sequence (44664 bp)
Overview 1 RT 1: 40117-43796 bp Neighborhood of RT #1 [40117, 43796] YhhI YhhI YhhI group_II_RT_mat RVT-GII Feature: gene Location: 40117-41238 bp Feature: domain Description: YhhI Location: 40123-40468 bp Feature: domain Description: YhhI Location: 401 23-40468 bp Feature: domain Description: YhhI Location: 40525-40879 bp Feature: domain Description: YhhI Location: 40525-40879 bp Feature: domain Description: YhhI Location: 40897-41140 bp Feature: domain Description: YhhI Location: 40897-41 1 40 bp Feature: gene Location: 41602-41853 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41608-41836 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41 608-41 836 bp Feature: gene Location: 41875-42954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42346-42937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42346-42937 bp Feature: gene Location: 43131-43355 bp Feature: gene Location: 43398-43796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), group_II_RT_mat (TIGR04416), RVT-GII

Seq: PTOJ01000069.1 Escherichia coli strain JL_F20_1 NODE_69_length_16083_cov_32.9391, whole genome shotgun sequence (16083 bp)
Overview 1 RT 1: 9704-13686 bp Neighborhood of RT #1 [9704, 13712] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9704-10735 bp Feature: domain Description: Asparaginase_2 Location: 9794-10727 bp Feature: domain Description: Asparaginase_2 Location: 9794-1072 7 bp Feature: gene Location: 11062-11211 bp Feature: gene Location: 11259-11705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11565-11667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11565-11667 bp Feature: gene Location: 11927-12298 bp Feature: gene Location: 12351-13712 bp Feature: domain Description: DcuC Location: 12354-13686 bp Feature: domain Description: DcuC Location: 12 354-13686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: PTOJ01000008.1 Escherichia coli strain JL_F20_1 NODE_8_length_145264_cov_33.643, whole genome shotgun sequence (145264 bp)
Overview 1 RT 1: 113217-118813 bp Neighborhood of RT #1 [113217, 118830] Q RVT-AbiP2 Phage_GPA DUF5405 Feature: gene Location: 113217-114251 bp Feature: domain Description: Q Location: 113220-114243 bp Feature: domain Description: Q Location: 113 220-114243 bp Feature: gene Location: 114290-114451 bp Feature: gene Location: 114464-116176 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 115046-115499 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 115046-115499 bp Feature: gene Location: 116280-118607 bp Feature: domain Description: Phage_GPA Location: 116721-117708 bp Feature: domain Description: Phage_GPA Location: 116721-117708 bp Feature: gene Location: 118555-118830 bp Feature: domain Description: DUF5405 Location: 118573-118813 bp Feature: domain Description: DUF5405 Location: 118573 -118813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-AbiP2, Phage_GPA (pfam05840), DUF5405 (pfam17399)