myRT

myRT report for GCA_002943185.1_ASM294318v1

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Seq: PTQJ01000014.1 Escherichia coli strain SWECR0124 contig000014, whole genome shotgun sequence (137279 bp)
Overview 1 RT 1: 89904-93200 bp Neighborhood of RT #1 [89904, 93214] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 89904-90290 bp Feature: domain Description: CdiI_3 Location: 89928-90204 bp Feature: domain Description: CdiI_3 Location: 89928-90204 bp Feature: gene Location: 90436-90630 bp Feature: gene Location: 90738-91220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91059-91146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 059-91 1 46 bp Feature: gene Location: 91259-92029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91262-91676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 262-91 676 bp Feature: domain Description: GIIM Note: maturase Location: 91727-91892 bp Feature: domain Description: GIIM Note: maturase Location: 91 727-91 892 bp Feature: gene Location: 92279-92497 bp Feature: gene Location: 92735-93214 bp Feature: domain Description: ArgR Location: 92768-93200 bp Feature: domain Description: ArgR Location: 92768-93200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)

Seq: PTQJ01000029.1 Escherichia coli strain SWECR0124 contig000029, whole genome shotgun sequence (43785 bp)
Overview 1 RT 1: 34941-42990 bp Neighborhood of RT #1 [34941, 43109] prfC DinI RVT-Retrons TIR_2 Caudo_TAP phage_tail_N 7tmA_amine_R-like Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 34941-36527 bp Feature: domain Description: prfC Location: 34959-36525 bp Feature: domain Description: prfC Location: 34959-3652 5 bp Feature: gene Location: 36808-37008 bp Feature: domain Description: DinI Location: 36817-36988 bp Feature: domain Description: DinI Location: 36817-36988 bp Feature: gene Location: 37368-38972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37659-38250 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37659-382 50 bp Feature: domain Description: TIR_2 Location: 38577-38865 bp Feature: domain Description: TIR_2 Location: 38577-38865 bp Feature: gene Location: 39418-40002 bp Feature: domain Description: Caudo_TAP Location: 39634-39991 bp Feature: domain Description: Caudo_TAP Location: 39634-39991 bp Feature: gene Location: 40002-43109 bp Feature: domain Description: phage_tail_N Location: 40005-40404 bp Feature: domain Description: phage_tail_N Location: 40005-40404 bp Feature: domain Description: 7tmA_amine_R-like Location: 40908-41331 bp Feature: domain Description: 7tmA_amine_R-like Location: 40908-41331 bp Feature: domain Description: Collar Location: 42480-42618 bp Feature: domain Description: Collar Location: 42 480-42 618 bp Feature: domain Description: Phage_fiber Location: 42669-42705 bp Feature: domain Description: Phage_fiber Location: 42 669-42 705 bp Feature: domain Description: Phage_fiber Location: 42765-42804 bp Feature: domain Description: Phage_fiber Location: 42 765-42 804 bp Feature: domain Description: Phage_fiber Location: 42912-42951 bp Feature: domain Description: Phage_fiber Location: 42 912 -42 951 bp Feature: domain Description: Phage_fiber Location: 42957-42990 bp Feature: domain Description: Phage_fiber Location: 42 957-42 990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), DinI (pfam06183), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: PTQJ01000036.1 Escherichia coli strain SWECR0124 contig000036, whole genome shotgun sequence (30660 bp)
Overview 1 RT 1: 11701-15859 bp 2 RT 2: 19170-23549 bp Neighborhood of RT #1 [11701, 15859] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Neighborhood of RT #2 [19170, 23554] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 11701-11904 bp Feature: gene Location: 12385-12525 bp Feature: gene Location: 12547-14271 bp Feature: RT Description: RVT_N Location: 12604-12841 bp Feature: RT Description: RVT_N Location: 12604-12841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12892-13540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12892-13 540 bp Feature: domain Description: YkfC Location: 13672-13828 bp Feature: domain Description: YkfC Location: 13 672-13 828 bp Feature: domain Description: HNHc Note: nucleases Location: 14056-14215 bp Feature: domain Description: HNHc Note: nucleases Location: 14056-14215 bp Feature: gene Location: 14348-15250 bp Feature: domain Description: DUF1281 Location: 14417-14945 bp Feature: domain Description: DUF1281 Location: 14417-14945 bp Feature: domain Description: DUF1281_C Location: 14951-15191 bp Feature: domain Description: DUF1281_C Location: 14951-15191 bp Feature: gene Location: 15320-15859 bp Feature: gene Location: 19170-19691 bp Feature: gene Location: 20383-20592 bp Feature: gene Location: 20727-22628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20994-21825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20994-21825 bp Feature: domain Description: Intron_maturas2 Location: 21939-22197 bp Feature: domain Description: Intron_maturas2 Location: 2193 9-22197 bp Feature: domain Description: HNHc Note: nucleases Location: 22371-22533 bp Feature: domain Description: HNHc Note: nucleases Location: 223 71-2253 3 bp Feature: gene Location: 22823-23263 bp Feature: domain Description: PRK13732 Location: 22829-23261 bp Feature: domain Description: PRK13 73 2 Location: 22829-23 261 bp Feature: gene Location: 23321-23554 bp Feature: domain Description: DUF905 Location: 23351-23549 bp Feature: domain Description: DUF905 Location: 23 3 51-23 549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)