myRT

myRT report for GCA_002943265.1_ASM294326v1

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Seq: PTQN01000011.1 Escherichia coli strain SWEC1172 contig000011, whole genome shotgun sequence (153994 bp)
Overview 1 RT 1: 33249-37567 bp Neighborhood of RT #1 [33249, 37608] TAT_signal MopB_3 PRK15102 TorD RVT-GII RVT-GII GIIM HigB-like_toxin antidote_HigA Feature: gene Location: 33249-35531 bp Feature: domain Description: TAT_signal Location: 33270-33339 bp Feature: domain Description: TAT_signal Location: 33270-33339 bp Feature: domain Description: MopB_3 Location: 33408-35121 bp Feature: domain Description: MopB_3 Location: 33408-351 21 bp Feature: domain Description: PRK15102 Location: 35145-35394 bp Feature: domain Description: PRK1 51 02 Location: 351 45-35394 bp Feature: gene Location: 35549-36040 bp Feature: domain Description: TorD Location: 35570-36032 bp Feature: domain Description: TorD Location: 35570-36032 bp Feature: gene Location: 36243-36491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36369-36489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36369-36489 bp Feature: gene Location: 36492-36995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36504-36687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36504-36687 bp Feature: domain Description: GIIM Note: maturase Location: 36747-36951 bp Feature: domain Description: GIIM Note: maturase Location: 36747-36951 bp Feature: gene Location: 37022-37318 bp Feature: domain Description: HigB-like_toxin Location: 37046-37316 bp Feature: domain Description: HigB-like_toxin Location: 37046-3731 6 bp Feature: gene Location: 37327-37608 bp Feature: domain Description: antidote_HigA Location: 37345-37567 bp Feature: domain Description: antidote_HigA Location: 37345-37567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAT_signal (pfam10518), MopB_3 (cd02766), PRK15102 (trimethylamine-N-oxide reductase TorA), TorD (COG3381), RVT-GII, GIIM (pfam08388), HigB-like_toxin (pfam05015), antidote_HigA (TIGR02607)

Seq: PTQN01000018.1 Escherichia coli strain SWEC1172 contig000018, whole genome shotgun sequence (109469 bp)
Overview 1 RT 1: 69301-74536 bp Neighborhood of RT #1 [69301, 74538] YdaS_antitoxin Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 69301-69672 bp Feature: domain Description: YdaS_antitoxin Location: 69340-69490 bp Feature: domain Description: YdaS_antitoxin Location: 69340-69490 bp Feature: gene Location: 69672-70256 bp Feature: domain Description: Caudo_TAP Location: 69888-70245 bp Feature: domain Description: Caudo_TAP Location: 69888-702 45 bp Feature: gene Location: 70369-71739 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 70597-71203 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 70597-712 03 bp Feature: gene Location: 71717-72421 bp Feature: domain Description: SLATT_5 Location: 71879-72389 bp Feature: domain Description: SLATT_5 Location: 71879-72 389 bp Feature: gene Location: 72952-74538 bp Feature: domain Description: prfC Location: 72970-74536 bp Feature: domain Description: prfC Location: 72 970-74536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdaS_antitoxin (pfam15943), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)