myRT

myRT report for GCA_002943715.1_ASM294371v1

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Seq: MQUA01000012.1 Polaribacter filamentus strain ATCC 700397 ctg7180000000040, whole genome shotgun sequence (9663 bp)
Overview 1 RT 1: 2734-9621 bp Neighborhood of RT #1 [2734, 9621] DUF3024 RVT-GII GIIM Peptidase_S41_IRBP RVT-GII Feature: gene Location: 2734-3159 bp Feature: domain Description: DUF3024 Location: 3037-3154 bp Feature: domain Description: DUF3024 Location: 3037-31 54 bp Feature: gene Location: 3255-3503 bp Feature: gene Location: 3682-4962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3877-4492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3877-4492 bp Feature: domain Description: GIIM Note: maturase Location: 4567-4777 bp Feature: domain Description: GIIM Note: maturase Location: 4567-4777 bp Feature: gene Location: 5055-5729 bp Feature: domain Description: Peptidase_S41_IRBP Location: 5133-5616 bp Feature: domain Description: Peptidase_S41 _IRBP Location: 51 33-561 6 bp Feature: gene Location: 6125-6286 bp Feature: gene Location: 6463-7719 bp Feature: gene Location: 7968-8216 bp Feature: gene Location: 8395-9156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8590-9037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8590-9037 bp Feature: gene Location: 9415-9621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3024 (pfam11225), RVT-GII, GIIM (pfam08388), Peptidase_S41_IRBP (cd07563)

Seq: MQUA01000013.1 Polaribacter filamentus strain ATCC 700397 ctg7180000000043, whole genome shotgun sequence (3188343 bp)
Overview 1 RT 1: 410153-419747 bp 2 RT 2: 901378-906075 bp 3 RT 3: 913911-919169 bp 4 RT 4: 1020569-1025487 bp 5 RT 5: 1480565-1485457 bp 6 RT 6: 1493825-1498040 bp 7 RT 7: 1525726-1531597 bp Neighborhood of RT #1 [410153, 419773] DUF3024 RVT-GII GIIM Peptidase_S41_IRBP RVT-GII GIIM AAA_15 integrase_gron integrase_gron Neighborhood of RT #2 [901378, 906075] PHA02517 InsE RVT-GII GIIM Methyltransf_25 Neighborhood of RT #3 [913911, 919169] PHA02517 HTH_psq UBQ RVT-GII GIIM Neighborhood of RT #4 [1020569, 1025487] RVT-GII GIIM Zn_Tnp_IS1595 DDE_Tnp_IS1595 Neighborhood of RT #5 [1480565, 1485807] CPBP RVT-GII GIIM DUF4369 Neighborhood of RT #6 [1493825, 1498040] RVT-GII GIIM OMP_RagA_SusC Neighborhood of RT #7 [1525726, 1531635] Hydrolase_4 Peptidase_S9 RVT-GII GIIM DUF3995 AmpC TPR Feature: gene Location: 410153-410620 bp Feature: domain Description: DUF3024 Location: 410456-410615 bp Feature: domain Description: DUF302 4 Location: 410456-410615 bp Feature: gene Location: 410716-410964 bp Feature: gene Location: 411143-412423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411338-411953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411338-411953 bp Feature: domain Description: GIIM Note: maturase Location: 412028-412238 bp Feature: domain Description: GIIM Note: maturase Location: 412 02 8-412 2 38 bp Feature: gene Location: 412516-413748 bp Feature: domain Description: Peptidase_S41_IRBP Location: 412615-413632 bp Feature: domain Description: Peptidase_S41_IRBP Location: 412 615-413632 bp Feature: gene Location: 413925-415220 bp Feature: gene Location: 415858-417138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416053-416668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416053-416668 bp Feature: domain Description: GIIM Note: maturase Location: 416743-416953 bp Feature: domain Description: GIIM Note: maturase Location: 416743-416953 bp Feature: gene Location: 417228-418916 bp Feature: domain Description: AAA_15 Location: 417231-418218 bp Feature: domain Description: AAA_15 Location: 4172 31-4182 18 bp Feature: gene Location: 419000-419773 bp Feature: domain Description: integrase_gron Location: 419012-419474 bp Feature: domain Description: integrase_gron Location: 419012 -419474 bp Feature: domain Description: integrase_gron Location: 419525-419747 bp Feature: domain Description: integrase_gron Location: 41952 5-419747 bp Feature: gene Location: 901378-902088 bp Feature: domain Description: PHA02517 Location: 901387-902035 bp Feature: domain Description: PHA02 517 Location: 901387-902 035 bp Feature: gene Location: 902214-902624 bp Feature: domain Description: InsE Location: 902253-902520 bp Feature: domain Description: InsE Location: 902 2 53-902 52 0 bp Feature: gene Location: 903307-904587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903502-904117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903502 -904117 bp Feature: domain Description: GIIM Note: maturase Location: 904192-904402 bp Feature: domain Description: GIIM Note: maturase Location: 904192 -904402 bp Feature: gene Location: 904651-905259 bp Feature: domain Description: Methyltransf_25 Location: 904741-905017 bp Feature: domain Description: Methyltransf_2 5 Location: 904741-905017 bp Feature: gene Location: 905479-906075 bp Feature: gene Location: 913911-914702 bp Feature: domain Description: PHA02517 Location: 913965-914655 bp Feature: domain Description: PHA02 517 Location: 913965-914655 bp Feature: gene Location: 914777-915160 bp Feature: domain Description: HTH_psq Location: 914858-914939 bp Feature: domain Description: HTH_psq Location: 914858-914939 bp Feature: domain Description: UBQ Location: 914957-915065 bp Feature: domain Description: UBQ Location: 914957-915065 bp Feature: gene Location: 915845-917125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916040-916655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916040-916655 bp Feature: domain Description: GIIM Note: maturase Location: 916730-916940 bp Feature: domain Description: GIIM Note: maturase Location: 916730-916940 bp Feature: gene Location: 917218-917832 bp Feature: gene Location: 917988-919169 bp Feature: gene Location: 1020569-1021492 bp Feature: gene Location: 1021581-1022030 bp Feature: gene Location: 1022654-1023934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022849-1023464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 2 849-102 3464 bp Feature: domain Description: GIIM Note: maturase Location: 1023539-1023749 bp Feature: domain Description: GIIM Note: maturase Location: 102 3539-102 3749 bp Feature: gene Location: 1024130-1025032 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 1024181-1024310 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 102 4181-102 4310 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1024514-1024931 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 102 4514-102 4931 bp Feature: gene Location: 1025047-1025487 bp Feature: gene Location: 1480565-1481329 bp Feature: domain Description: CPBP Location: 1480823-1481291 bp Feature: domain Description: CPBP Location: 148082 3-14812 91 bp Feature: gene Location: 1481519-1482271 bp Feature: gene Location: 1482351-1483631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482546-1483161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482 546-1483161 bp Feature: domain Description: GIIM Note: maturase Location: 1483236-1483446 bp Feature: domain Description: GIIM Note: maturase Location: 14832 36-1483446 bp Feature: gene Location: 1484289-1484951 bp Feature: gene Location: 1485094-1485807 bp Feature: domain Description: DUF4369 Location: 1485184-1485457 bp Feature: domain Description: DUF4369 Location: 1485184-1485457 bp Feature: gene Location: 1493825-1494313 bp Feature: gene Location: 1494627-1495118 bp Feature: gene Location: 1495208-1496488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1495403-1496018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1495403-1496018 bp Feature: domain Description: GIIM Note: maturase Location: 1496093-1496303 bp Feature: domain Description: GIIM Note: maturase Location: 1496093-1496303 bp Feature: gene Location: 1497193-1497747 bp Feature: domain Description: OMP_RagA_SusC Location: 1497259-1497547 bp Feature: domain Description: OMP_RagA_SusC Location: 14972 59-1497547 bp Feature: gene Location: 1497744-1498040 bp Feature: gene Location: 1525726-1525893 bp Feature: gene Location: 1526084-1527487 bp Feature: domain Description: Hydrolase_4 Location: 1526660-1526924 bp Feature: domain Description: Hydrolase_4 Location: 152 6660-152 692 4 bp Feature: domain Description: Peptidase_S9 Location: 1527191-1527416 bp Feature: domain Description: Peptidase_S9 Location: 152 7191-152 7416 bp Feature: gene Location: 1527608-1528888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527803-1528418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 7803-152 8418 bp Feature: domain Description: GIIM Note: maturase Location: 1528493-1528703 bp Feature: domain Description: GIIM Note: maturase Location: 152 8493-152 8703 bp Feature: gene Location: 1529540-1529959 bp Feature: domain Description: DUF3995 Location: 1529573-1529933 bp Feature: domain Description: DUF3995 Location: 152 9573-152 9933 bp Feature: gene Location: 1530169-1531635 bp Feature: domain Description: AmpC Location: 1530232-1531204 bp Feature: domain Description: AmpC Location: 15302 32 -15312 04 bp Feature: domain Description: TPR Location: 1531396-1531597 bp Feature: domain Description: TPR Location: 1531396-1531597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3024 (pfam11225), RVT-GII, GIIM (pfam08388), Peptidase_S41_IRBP (cd07563), AAA_15 (pfam13175), integrase_gron (TIGR02249), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Methyltransf_25 (pfam13649), HTH_psq (pfam05225)
UBQ (smart00213), Zn_Tnp_IS1595 (pfam12760), DDE_Tnp_IS1595 (pfam12762), CPBP, DUF4369 (pfam14289), OMP_RagA_SusC (TIGR04056), Hydrolase_4 (pfam12146), Peptidase_S9 (pfam00326), DUF3995 (pfam13160), AmpC (COG1680)
TPR (smart00028)

Seq: MQUA01000014.1 Polaribacter filamentus strain ATCC 700397 ctg7180000000044, whole genome shotgun sequence (602406 bp)
Overview 1 RT 1: 468636-473155 bp Neighborhood of RT #1 [468636, 473262] DUF4386 RVT-GII GIIM Inhibitor_I69 Peptidase_C10 Feature: gene Location: 468636-469349 bp Feature: domain Description: DUF4386 Location: 468666-469302 bp Feature: domain Description: DUF43 86 Location: 468666-4693 02 bp Feature: gene Location: 469632-469880 bp Feature: gene Location: 470059-471339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470254-470869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470254-470869 bp Feature: domain Description: GIIM Note: maturase Location: 470944-471154 bp Feature: domain Description: GIIM Note: maturase Location: 470944-471154 bp Feature: gene Location: 471425-471931 bp Feature: gene Location: 471943-473262 bp Feature: domain Description: Inhibitor_I69 Location: 472093-472381 bp Feature: domain Description: Inhibitor_I69 Location: 472093 -4723 81 bp Feature: domain Description: Peptidase_C10 Location: 472588-473155 bp Feature: domain Description: Peptidase_C10 Location: 472588-473 155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4386 (pfam14329), RVT-GII, GIIM (pfam08388), Inhibitor_I69 (pfam13734), Peptidase_C10 (pfam01640)