myRT

myRT report for GCA_002945275.1_ASM294527v1

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Seq: PTVO01000014.1 Enterococcus faecalis strain CVM N59862F N59862F_S43_L001_R1_001_contig_14, whole genome shotgun sequence (45132 bp)
Overview 1 RT 1: 41438-45023 bp Neighborhood of RT #1 [41438, 45058] DHR10 RVT-GII InsE PHA02517 Feature: gene Location: 41438-41683 bp Feature: domain Description: DHR10 Location: 41450-41567 bp Feature: domain Description: DHR1 0 Location: 41 450-41 567 bp Feature: gene Location: 41670-42296 bp Feature: gene Location: 42569-43999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42737-43124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42737-431 24 bp Feature: gene Location: 43929-44219 bp Feature: domain Description: InsE Location: 43941-44214 bp Feature: domain Description: InsE Location: 43941 -4421 4 bp Feature: gene Location: 44261-45058 bp Feature: domain Description: PHA02517 Location: 44315-45023 bp Feature: domain Description: PHA0251 7 Location: 4431 5-45023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHR10 (pfam18595), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PTVO01000025.1 Enterococcus faecalis strain CVM N59862F N59862F_S43_L001_R1_001_contig_25, whole genome shotgun sequence (75289 bp)
Overview 1 RT 1: 31417-36368 bp Neighborhood of RT #1 [31417, 36368] YczE TIGR04141 RVT-Retrons Feature: gene Location: 31417-32019 bp Feature: domain Description: YczE Location: 31426-32011 bp Feature: domain Description: YczE Location: 3142 6-32 011 bp Feature: gene Location: 32385-34103 bp Feature: domain Description: TIGR04141 Location: 32430-33819 bp Feature: domain Description: TIGR04141 Location: 32 430-33819 bp Feature: gene Location: 34144-35136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34279-34825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342 79-3482 5 bp Feature: gene Location: 35123-35392 bp Feature: gene Location: 36063-36368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YczE (COG2364), TIGR04141 (sporadically distributed protein, TIGR04141 family), RVT-Retrons

Seq: PTVO01000031.1 Enterococcus faecalis strain CVM N59862F N59862F_S43_L001_R1_001_contig_31, whole genome shotgun sequence (27626 bp)
Overview 1 RT 1: 3448-9315 bp Neighborhood of RT #1 [3448, 9338] Omega_Repress PRK07726 RVT-GII HNHc PRK07726 PinE Feature: gene Location: 3448-3687 bp Feature: domain Description: Omega_Repress Location: 3451-3661 bp Feature: domain Description: Omega_Repress Location: 3 451-3 661 bp Feature: gene Location: 3807-5495 bp Feature: domain Description: PRK07726 Location: 3810-5343 bp Feature: domain Description: PRK07726 Location: 3 810-53 43 bp Feature: gene Location: 5736-7622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6051-6789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6051-6789 bp Feature: domain Description: HNHc Note: nucleases Location: 7341-7506 bp Feature: domain Description: HNHc Note: nucleases Location: 73 41-7506 bp Feature: gene Location: 8359-8721 bp Feature: domain Description: PRK07726 Location: 8368-8701 bp Feature: domain Description: PRK07726 Location: 83 68-8701 bp Feature: gene Location: 8721-9338 bp Feature: domain Description: PinE Location: 8724-9315 bp Feature: domain Description: PinE Location: 8724-93 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Omega_Repress (pfam07764), PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), PinE (COG1961)

Seq: PTVO01000008.1 Enterococcus faecalis strain CVM N59862F N59862F_S43_L001_R1_001_contig_8, whole genome shotgun sequence (29348 bp)
Overview 1 RT 1: 6894-11835 bp 2 RT 2: 23037-29327 bp Neighborhood of RT #1 [6894, 11855] Sipho_Gp157 PRK07983 RVT-GII GIIM DUF4373 DnaD_dom RusA Neighborhood of RT #2 [23037, 29332] TraC-F-type Phage_lysozyme2 PRK08581 RVT-GII Feature: gene Location: 6894-7373 bp Feature: domain Description: Sipho_Gp157 Location: 6903-7371 bp Feature: domain Description: Sipho_Gp157 Location: 6903-7371 bp Feature: gene Location: 7386-8369 bp Feature: domain Description: PRK07983 Location: 7698-8040 bp Feature: domain Description: PRK07983 Location: 7698-804 0 bp Feature: gene Location: 8959-10281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9259-9895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9259-9895 bp Feature: domain Description: GIIM Note: maturase Location: 9967-10183 bp Feature: domain Description: GIIM Note: maturase Location: 9967-10183 bp Feature: gene Location: 10463-11431 bp Feature: domain Description: DUF4373 Location: 10496-10775 bp Feature: domain Description: DUF4 373 Location: 104 96-10775 bp Feature: domain Description: DnaD_dom Location: 11042-11246 bp Feature: domain Description: DnaD_dom Location: 1104 2-1124 6 bp Feature: gene Location: 11706-11855 bp Feature: domain Description: RusA Location: 11709-11835 bp Feature: domain Description: RusA Location: 11709-11835 bp Feature: gene Location: 23037-25427 bp Feature: domain Description: TraC-F-type Location: 23457-25251 bp Feature: domain Description: TraC-F-type Location: 234 57-25251 bp Feature: gene Location: 25439-27952 bp Feature: domain Description: Phage_lysozyme2 Location: 27071-27596 bp Feature: domain Description: Phage_lysozyme2 Location: 27071-27596 bp Feature: domain Description: PRK08581 Location: 27716-27935 bp Feature: domain Description: PRK08581 Location: 27716-27935 bp Feature: gene Location: 28676-29332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29000-29327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29000-29327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4373 (pfam14297), DnaD_dom (TIGR01446), RusA (pfam05866), Sipho_Gp157 (pfam05565), PRK07983 (exodeoxyribonuclease X; Provisional), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)