myRT

myRT report for GCA_002947295.1_ASM294729v1

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Seq: PUAV01000019.1 Enterococcus faecium strain CVM N55317 N55317_S47_L001_R1_001_contig_19, whole genome shotgun sequence (79220 bp)
Overview 1 RT 1: 62937-69302 bp Neighborhood of RT #1 [62937, 69337] TpcC LysR RVT-GII PRK06482 COG4932 Feature: gene Location: 62937-63854 bp Feature: domain Description: TpcC Location: 63174-63840 bp Feature: domain Description: TpcC Location: 631 74-63840 bp Feature: gene Location: 64088-64912 bp Feature: domain Description: LysR Location: 64091-64805 bp Feature: domain Description: LysR Location: 64091 -64805 bp Feature: gene Location: 65448-66167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65769-66165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65769-661 65 bp Feature: gene Location: 66062-66406 bp Feature: domain Description: PRK06482 Location: 66143-66395 bp Feature: domain Description: PRK06482 Location: 661 43-66395 bp Feature: gene Location: 67079-69337 bp Feature: domain Description: COG4932 Location: 67118-69302 bp Feature: domain Description: COG4932 Location: 671 1 8-69302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TpcC (pfam12642), LysR (COG0583), RVT-GII, PRK06482 (SDR family oxidoreductase), COG4932 (Uncharacterized surface anchored protein )

Seq: PUAV01000035.1 Enterococcus faecium strain CVM N55317 N55317_S47_L001_R1_001_contig_35, whole genome shotgun sequence (14344 bp)
Overview 1 RT 1: 2710-9607 bp Neighborhood of RT #1 [2710, 9675] BcsQ PRK07726 RVT-GII HNHc TetR_N TetR_C_28 EmrE Feature: gene Location: 2710-3606 bp Feature: domain Description: BcsQ Location: 2842-3547 bp Feature: domain Description: BcsQ Location: 2 842 -3547 bp Feature: gene Location: 3709-5421 bp Feature: domain Description: PRK07726 Location: 3715-5269 bp Feature: domain Description: PRK0772 6 Location: 3715-52 69 bp Feature: gene Location: 5640-7526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5955-6693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5955-6693 bp Feature: domain Description: HNHc Note: nucleases Location: 7242-7410 bp Feature: domain Description: HNHc Note: nucleases Location: 72 42 -7410 bp Feature: gene Location: 8735-9298 bp Feature: domain Description: TetR_N Location: 8786-8918 bp Feature: domain Description: TetR_N Location: 8786-8918 bp Feature: domain Description: TetR_C_28 Location: 8999-9284 bp Feature: domain Description: TetR_C_2 8 Location: 8999-92 84 bp Feature: gene Location: 9298-9675 bp Feature: domain Description: EmrE Location: 9301-9607 bp Feature: domain Description: EmrE Location: 9301-9607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), TetR_N (pfam00440), TetR_C_28 (pfam17937), EmrE (pfam13536)