myRT

myRT report for GCA_002949895.1_ASM294989v1

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Seq: CP026867.1 Shigella boydii strain DMB SH135 chromosome (4607924 bp)
Overview 1 RT 1: 3552537-3560942 bp Neighborhood of RT #1 [3552537, 3560944] phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 3552537-3555884 bp Feature: domain Description: phage_tail_N Location: 3552540-3552939 bp Feature: domain Description: phage_tail_N Location: 3552540-3552939 bp Feature: domain Description: 34 Location: 3554637-3554970 bp Feature: domain Description: 34 Location: 3554637-3554970 bp Feature: domain Description: Collar Location: 3555255-3555393 bp Feature: domain Description: Collar Location: 3555255-3555393 bp Feature: domain Description: Phage_fiber Location: 3555444-3555483 bp Feature: domain Description: Phage_fiber Location: 3555444-3555483 bp Feature: domain Description: Phage_fiber Location: 3555540-3555579 bp Feature: domain Description: Phage_fiber Location: 3555540-3555579 bp Feature: domain Description: Phage_fiber Location: 3555687-3555726 bp Feature: domain Description: Phage_fiber Location: 3555687-3555726 bp Feature: domain Description: Phage_fiber Location: 3555732-3555765 bp Feature: domain Description: Phage_fiber Location: 3555732-3555765 bp Feature: gene Location: 3555884-3556468 bp Feature: domain Description: Caudo_TAP Location: 3556100-3556457 bp Feature: domain Description: Caudo_TAP Location: 35561 00-3556457 bp Feature: gene Location: 3556914-3558518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3557205-3557796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3557205-3557796 bp Feature: domain Description: TIR_2 Location: 3558123-3558411 bp Feature: domain Description: TIR_2 Location: 35581 23-355841 1 bp Feature: gene Location: 3558878-3559138 bp Feature: domain Description: PRK10597 Location: 3558881-3559121 bp Feature: domain Description: PRK1 0597 Location: 3558881 -35591 21 bp Feature: gene Location: 3559358-3560944 bp Feature: domain Description: prfC Location: 3559376-3560942 bp Feature: domain Description: prfC Location: 3559376-3560942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: CP026868.1 Shigella boydii strain DMB SH135 plasmid unnamed1 (145169 bp)
Overview 1 RT 1: 50799-53453 bp Neighborhood of RT #1 [50799, 53453] COG3547 RVT-GII GIIM Feature: gene Location: 50799-51284 bp Feature: domain Description: COG3547 Location: 50817-51270 bp Feature: domain Description: COG3547 Location: 50817-512 70 bp Feature: gene Location: 51380-51547 bp Feature: gene Location: 51573-52790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51759-52413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51759-52 413 bp Feature: domain Description: GIIM Note: maturase Location: 52491-52713 bp Feature: domain Description: GIIM Note: maturase Location: 52 491-52 713 bp Feature: gene Location: 52801-53220 bp Feature: gene Location: 53259-53453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)