myRT

myRT report for GCA_002949955.1_ASM294995v1

Download annotations/find similar RTs

Seq: CP026866.1 Shigella boydii strain ATCC 12027 chromosome (4680268 bp)
Overview 1 RT 1: 3047534-3055821 bp Neighborhood of RT #1 [3047534, 3055940] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 3047534-3049120 bp Feature: domain Description: prfC Location: 3047552-3049118 bp Feature: domain Description: prfC Location: 3047552-30491 1 8 bp Feature: gene Location: 3049340-3049600 bp Feature: domain Description: PRK10597 Location: 3049343-3049583 bp Feature: domain Description: PRK1 0597 Location: 3049343-3049583 bp Feature: gene Location: 3049960-3051564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3050251-3050842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3050251 -3050842 bp Feature: domain Description: TIR_2 Location: 3051169-3051457 bp Feature: domain Description: TIR_2 Location: 3051 1 69-3051 457 bp Feature: gene Location: 3052009-3052593 bp Feature: domain Description: Caudo_TAP Location: 3052225-3052582 bp Feature: domain Description: Caudo_TAP Location: 3052225-3052582 bp Feature: gene Location: 3052593-3055940 bp Feature: domain Description: phage_tail_N Location: 3052596-3052995 bp Feature: domain Description: phage_tail_N Location: 3052596-3052995 bp Feature: domain Description: 34 Location: 3054693-3055026 bp Feature: domain Description: 34 Location: 3054693-3055026 bp Feature: domain Description: Collar Location: 3055311-3055449 bp Feature: domain Description: Collar Location: 305531 1 -3055449 bp Feature: domain Description: Phage_fiber Location: 3055500-3055539 bp Feature: domain Description: Phage_fiber Location: 3055500-3055539 bp Feature: domain Description: Phage_fiber Location: 3055596-3055635 bp Feature: domain Description: Phage_fiber Location: 3055596-3055635 bp Feature: domain Description: Phage_fiber Location: 3055743-3055782 bp Feature: domain Description: Phage_fiber Location: 3055743-3055782 bp Feature: domain Description: Phage_fiber Location: 3055788-3055821 bp Feature: domain Description: Phage_fiber Location: 3055788-3055821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: CP026865.1 Shigella boydii strain ATCC 12027 plasmid unnamed (135321 bp)
Overview 1 RT 1: 92990-96316 bp Neighborhood of RT #1 [92990, 96330] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 92990-93637 bp Feature: domain Description: PHA02517 Location: 92993-93635 bp Feature: domain Description: PHA02 517 Location: 92 993-93635 bp Feature: gene Location: 93731-93862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 93743-93836 bp Feature: domain Description: DDE_Tnp_IS66 Location: 93743-93836 bp Feature: gene Location: 94424-95014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94526-94988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452 6-94988 bp Feature: gene Location: 95029-95556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95035-95179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95035-95179 bp Feature: domain Description: GIIM Note: maturase Location: 95257-95479 bp Feature: domain Description: GIIM Note: maturase Location: 952 57-95479 bp Feature: gene Location: 95672-95818 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 95684-95795 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 95684-95795 bp Feature: gene Location: 95845-96330 bp Feature: domain Description: COG3547 Location: 95863-96316 bp Feature: domain Description: COG3547 Location: 95863-96316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )