myRT

myRT report for GCA_002950295.1_ASM295029v1

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Seq: CP026872.1 Shigella dysenteriae strain ATCC 9764 chromosome (4711198 bp)
Overview 1 RT 1: 2244833-2250570 bp Neighborhood of RT #1 [2244833, 2250689] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 2244833-2246419 bp Feature: domain Description: prfC Location: 2244851-2246417 bp Feature: domain Description: prfC Location: 2244851 -224641 7 bp Feature: gene Location: 2246639-2246899 bp Feature: domain Description: PRK10597 Location: 2246642-2246882 bp Feature: domain Description: PRK1 0597 Location: 2246642-2246882 bp Feature: gene Location: 2247259-2248863 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2247550-2248141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2247550-22481 41 bp Feature: domain Description: TIR_2 Location: 2248468-2248756 bp Feature: domain Description: TIR_2 Location: 2248468-2248756 bp Feature: gene Location: 2249308-2249892 bp Feature: domain Description: Caudo_TAP Location: 2249524-2249881 bp Feature: domain Description: Caudo_TAP Location: 2249524-2249881 bp Feature: gene Location: 2249892-2250689 bp Feature: domain Description: Collar Location: 2250060-2250198 bp Feature: domain Description: Collar Location: 2250060-22501 98 bp Feature: domain Description: Phage_fiber Location: 2250249-2250288 bp Feature: domain Description: Phage_fiber Location: 2250249-2250288 bp Feature: domain Description: Phage_fiber Location: 2250345-2250384 bp Feature: domain Description: Phage_fiber Location: 2250345-2250384 bp Feature: domain Description: Phage_fiber Location: 2250390-2250417 bp Feature: domain Description: Phage_fiber Location: 2250390-225041 7 bp Feature: domain Description: Phage_fiber Location: 2250492-2250531 bp Feature: domain Description: Phage_fiber Location: 2250492-2250531 bp Feature: domain Description: Phage_fiber Location: 2250537-2250570 bp Feature: domain Description: Phage_fiber Location: 2250537-2250570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: CP026873.1 Shigella dysenteriae strain ATCC 9764 plasmid unnamed (166878 bp)
Overview 1 RT 1: 3621-6039 bp 2 RT 2: 77804-81116 bp 3 RT 3: 152198-154846 bp Neighborhood of RT #1 [3621, 6039] DEDD_Tnp_IS110 GIIM RVT-GII Neighborhood of RT #2 [77804, 81118] PAP2_acid_phosphatase Tra5 RVT-GII InsE PHA02517 Neighborhood of RT #3 [152198, 154846] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3621-3770 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3642-3753 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3642 -3753 bp Feature: gene Location: 4173-4544 bp Feature: domain Description: GIIM Note: maturase Location: 4245-4467 bp Feature: domain Description: GIIM Note: maturase Location: 42 45-4467 bp Feature: gene Location: 4714-5304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4816-5278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4816-52 78 bp Feature: gene Location: 5301-5663 bp Feature: gene Location: 5857-6039 bp Feature: gene Location: 77804-78553 bp Feature: domain Description: PAP2_acid_phosphatase Location: 77879-78533 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 77879-78533 bp Feature: gene Location: 78928-79149 bp Feature: domain Description: Tra5 Location: 78940-79132 bp Feature: domain Description: Tra5 Location: 78940-79132 bp Feature: gene Location: 79413-79841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79461-79806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79461-79806 bp Feature: gene Location: 79906-80232 bp Feature: domain Description: InsE Location: 79909-80230 bp Feature: domain Description: InsE Location: 79909-802 30 bp Feature: gene Location: 80471-81118 bp Feature: domain Description: PHA02517 Location: 80474-81116 bp Feature: domain Description: PHA02 517 Location: 80474-81116 bp Feature: gene Location: 152198-152683 bp Feature: domain Description: COG3547 Location: 152216-152669 bp Feature: domain Description: COG3547 Location: 152 2 16-152 669 bp Feature: gene Location: 152779-152946 bp Feature: gene Location: 152972-153499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152978-153122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 978-15312 2 bp Feature: domain Description: GIIM Note: maturase Location: 153200-153422 bp Feature: domain Description: GIIM Note: maturase Location: 1532 00-15342 2 bp Feature: gene Location: 153514-154203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153715-154177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153715-154177 bp Feature: gene Location: 154198-154617 bp Feature: gene Location: 154652-154846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), GIIM (pfam08388), RVT-GII, PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )