myRT

myRT report for GCA_002950355.1_ASM295035v1

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Seq: CP026874.1 Shigella boydii strain NCTC 9734 plasmid unnamed (193652 bp)
Overview 1 RT 1: 24462-27788 bp 2 RT 2: 92764-96571 bp 3 RT 3: 187772-190572 bp Neighborhood of RT #1 [24462, 27802] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [92764, 96654] DDE_Tnp_1 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #3 [187772, 190595] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 24462-25109 bp Feature: domain Description: PHA02517 Location: 24465-25107 bp Feature: domain Description: PHA0251 7 Location: 24465-251 07 bp Feature: gene Location: 25203-25334 bp Feature: domain Description: DDE_Tnp_IS66 Location: 25215-25308 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2521 5-25308 bp Feature: gene Location: 25896-26486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25998-26460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25998-26460 bp Feature: gene Location: 26501-27028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26507-26651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26507-26651 bp Feature: domain Description: GIIM Note: maturase Location: 26729-26951 bp Feature: domain Description: GIIM Note: maturase Location: 26729-26951 bp Feature: gene Location: 27144-27290 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 27156-27267 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 271 56-27267 bp Feature: gene Location: 27317-27802 bp Feature: domain Description: COG3547 Location: 27335-27788 bp Feature: domain Description: COG3547 Location: 27335-27788 bp Feature: gene Location: 92764-93171 bp Feature: domain Description: DDE_Tnp_1 Location: 92830-93076 bp Feature: domain Description: DDE_Tnp_1 Location: 92830-93076 bp Feature: gene Location: 93289-94071 bp Feature: domain Description: DDE_Tnp_1 Location: 93295-94003 bp Feature: domain Description: DDE_Tnp_1 Location: 93295-94003 bp Feature: gene Location: 94097-94300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94205-94295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94205-94295 bp Feature: gene Location: 94361-94717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94370-94691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94370-94691 bp Feature: gene Location: 94811-95479 bp Feature: domain Description: HTH_23 Location: 94919-95006 bp Feature: domain Description: HTH_23 Location: 9491 9-95006 bp Feature: domain Description: InsE Location: 95135-95330 bp Feature: domain Description: InsE Location: 951 35-95330 bp Feature: gene Location: 95623-96654 bp Feature: domain Description: HTH_23 Location: 95704-95842 bp Feature: domain Description: HTH_23 Location: 95704-95842 bp Feature: domain Description: HTH_33 Location: 95947-96094 bp Feature: domain Description: HTH_33 Location: 95947-96094 bp Feature: domain Description: DDE_3 Location: 96151-96571 bp Feature: domain Description: DDE_3 Location: 961 51 -96571 bp Feature: gene Location: 187772-188419 bp Feature: domain Description: PHA02517 Location: 187775-188417 bp Feature: domain Description: PHA0251 7 Location: 1 87775-1 8841 7 bp Feature: gene Location: 188513-188644 bp Feature: domain Description: DDE_Tnp_IS66 Location: 188525-188618 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 88525-1 8861 8 bp Feature: gene Location: 189105-189464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189306-189405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89306-1 89405 bp Feature: gene Location: 189509-190087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189512-189959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8951 2-1 89959 bp Feature: gene Location: 190026-190334 bp Feature: domain Description: GIIM Note: maturase Location: 190050-190257 bp Feature: domain Description: GIIM Note: maturase Location: 1 90050-1 90257 bp Feature: gene Location: 190452-190595 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 190461-190572 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 90461 -1 90572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592)
DDE_3 (pfam13358)