myRT

myRT report for GCA_002951495.1_ASM295149v1

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Seq: PUBY01000014.1 Escherichia fergusonii strain YH17130 scaf12_2, whole genome shotgun sequence (71177 bp)
Overview 1 RT 1: 2-2737 bp Neighborhood of RT #1 [2, 2737] PHA02517 RVT-GII RVT-GII RVT-GII GIIM Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 5-92 bp Feature: domain Description: PHA0251 7 Location: 5-92 bp Feature: gene Location: 422-628 bp Feature: gene Location: 749-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 022-1 205 bp Feature: gene Location: 1285-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 288-1 480 bp Feature: gene Location: 1576-2055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 582-1 753 bp Feature: domain Description: GIIM Note: maturase Location: 1828-2026 bp Feature: domain Description: GIIM Note: maturase Location: 1 828-2026 bp Feature: gene Location: 2358-2561 bp Feature: gene Location: 2570-2737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PUBY01000016.1 Escherichia fergusonii strain YH17130 scaf14_1, whole genome shotgun sequence (96849 bp)
Overview 1 RT 1: 94531-96811 bp Neighborhood of RT #1 [94531, 96846] PRK10349 RVT-GII GIIM HNHc Feature: gene Location: 94531-95301 bp Feature: domain Description: PRK10349 Location: 94534-95299 bp Feature: domain Description: PRK10349 Location: 94534-952 99 bp Feature: gene Location: 95446-95583 bp Feature: gene Location: 95734-96846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95737-96157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95737-96157 bp Feature: domain Description: GIIM Note: maturase Location: 96208-96442 bp Feature: domain Description: GIIM Note: maturase Location: 962 08-96442 bp Feature: domain Description: HNHc Note: nucleases Location: 96652-96811 bp Feature: domain Description: HNHc Note: nucleases Location: 96652 -96811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10349 (pimeloyl-ACP methyl ester esterase BioH), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PUBY01000004.1 Escherichia fergusonii strain YH17130 scaf3_1, whole genome shotgun sequence (569042 bp)
Overview 1 RT 1: 361017-366662 bp Neighborhood of RT #1 [361017, 366664] Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 361017-361604 bp Feature: domain Description: Phage_fiber Location: 361158-361197 bp Feature: domain Description: Phage_fiber Location: 3 61158-3 61197 bp Feature: domain Description: Phage_fiber Location: 361254-361293 bp Feature: domain Description: Phage_fiber Location: 3 61254-3 61293 bp Feature: domain Description: Phage_fiber Location: 361299-361323 bp Feature: domain Description: Phage_fiber Location: 3 61299-3 613 23 bp Feature: domain Description: Phage_fiber Location: 361407-361446 bp Feature: domain Description: Phage_fiber Location: 3 61407-3 61446 bp Feature: domain Description: Phage_fiber Location: 361452-361476 bp Feature: domain Description: Phage_fiber Location: 3 61452-3 61476 bp Feature: domain Description: Phage_fiber Location: 361482-361512 bp Feature: domain Description: Phage_fiber Location: 3 61482-3 61512 bp Feature: gene Location: 361604-362188 bp Feature: domain Description: Caudo_TAP Location: 361820-362177 bp Feature: domain Description: Caudo_TAP Location: 3 61820-3 62177 bp Feature: gene Location: 362634-364238 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362925-363516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 62925-3 63 516 bp Feature: domain Description: TIR_2 Location: 363843-364131 bp Feature: domain Description: TIR_2 Location: 3 63 843 -3 6413 1 bp Feature: gene Location: 364598-364858 bp Feature: domain Description: PRK10597 Location: 364601-364841 bp Feature: domain Description: PRK10597 Location: 3 64601-3 64841 bp Feature: gene Location: 365078-366664 bp Feature: domain Description: prfC Location: 365096-366662 bp Feature: domain Description: prfC Location: 3 65096-3 66662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: PUBY01000055.1 Escherichia fergusonii strain YH17130 scaf46_1, whole genome shotgun sequence (6929 bp)
Overview 1 RT 1: 404-6649 bp Neighborhood of RT #1 [404, 6649] CspC RVT-Retrons CspC RVT-Retrons Feature: gene Location: 404-565 bp Feature: gene Location: 753-956 bp Feature: domain Description: CspC Location: 756-951 bp Feature: domain Description: CspC Location: 756-951 bp Feature: gene Location: 961-2100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1105-1660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1105-1660 bp Feature: gene Location: 2122-2304 bp Feature: gene Location: 2394-2549 bp Feature: gene Location: 4504-4665 bp Feature: gene Location: 4853-5056 bp Feature: domain Description: CspC Location: 4856-5051 bp Feature: domain Description: CspC Location: 4 856-5051 bp Feature: gene Location: 5061-6200 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5205-5760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5205-5760 bp Feature: gene Location: 6222-6404 bp Feature: gene Location: 6494-6649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: PUBY01000005.1 Escherichia fergusonii strain YH17130 scaf4_1, whole genome shotgun sequence (240107 bp)
Overview 1 RT 1: 101327-105207 bp Neighborhood of RT #1 [101327, 105212] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 101327-102043 bp Feature: domain Description: rph Location: 101330-102038 bp Feature: domain Description: rph Location: 101330-102038 bp Feature: gene Location: 102094-102750 bp Feature: domain Description: pyrE Location: 102112-102745 bp Feature: domain Description: pyrE Location: 102112-102745 bp Feature: gene Location: 103048-104007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103183-103732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103183-103732 bp Feature: gene Location: 104051-104647 bp Feature: domain Description: slmA Location: 104057-104633 bp Feature: domain Description: slmA Location: 10405 7-104633 bp Feature: gene Location: 104754-105212 bp Feature: domain Description: dut Location: 104760-105207 bp Feature: domain Description: dut Location: 104760-105 207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PUBY01000006.1 Escherichia fergusonii strain YH17130 scaf5_1, whole genome shotgun sequence (213014 bp)
Overview 1 RT 1: 51823-56309 bp Neighborhood of RT #1 [51823, 56311] RVT_N RVT-GII YkfC HNHc sspA SspB Feature: gene Location: 51823-52023 bp Feature: gene Location: 52545-52685 bp Feature: gene Location: 53042-54775 bp Feature: RT Description: RVT_N Location: 53120-53363 bp Feature: RT Description: RVT_N Location: 53120-5336 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53408-54050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53408-54050 bp Feature: domain Description: YkfC Location: 54176-54368 bp Feature: domain Description: YkfC Location: 54176 -5436 8 bp Feature: domain Description: HNHc Note: nucleases Location: 54563-54719 bp Feature: domain Description: HNHc Note: nucleases Location: 5456 3-54719 bp Feature: gene Location: 55164-55802 bp Feature: domain Description: sspA Location: 55167-55797 bp Feature: domain Description: sspA Location: 5516 7-55797 bp Feature: gene Location: 55808-56311 bp Feature: domain Description: SspB Location: 55817-56309 bp Feature: domain Description: SspB Location: 55817-56 309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), sspA (PRK09481), SspB (pfam04386)

Seq: PUBY01000071.1 Escherichia fergusonii strain YH17130 scaf61_1, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-157 3 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)