myRT

myRT report for GCA_002951525.1_ASM295152v1

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Seq: PUBX01000012.1 Escherichia fergusonii strain YH17132 scaf8_1, whole genome shotgun sequence (277649 bp)
Overview 1 RT 1: 134152-138032 bp 2 RT 2: 164038-170381 bp Neighborhood of RT #1 [134152, 138037] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #2 [164038, 170392] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 134152-134610 bp Feature: domain Description: dut Location: 134158-134605 bp Feature: domain Description: dut Location: 1 341 58-1 34605 bp Feature: gene Location: 134717-135313 bp Feature: domain Description: slmA Location: 134723-135299 bp Feature: domain Description: slmA Location: 1 34723-1 35299 bp Feature: gene Location: 135357-136316 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 135492-136041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 35492-1 36041 bp Feature: gene Location: 136614-137270 bp Feature: domain Description: pyrE Location: 136632-137265 bp Feature: domain Description: pyrE Location: 1 36632-1 37265 bp Feature: gene Location: 137321-138037 bp Feature: domain Description: rph Location: 137324-138032 bp Feature: domain Description: rph Location: 1 37324-1 38032 bp Feature: gene Location: 164038-166371 bp Feature: domain Description: Prim_Zn_Ribbon Location: 164128-164236 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1 641 28-1 64236 bp Feature: domain Description: COG3378 Location: 164848-166360 bp Feature: domain Description: COG3378 Location: 1 64848-1 66360 bp Feature: gene Location: 166647-166781 bp Feature: gene Location: 166957-168588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 167272-167869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 67272-1 67869 bp Feature: domain Description: TIR_2 Location: 168193-168550 bp Feature: domain Description: TIR_2 Location: 1 681 93-1 68550 bp Feature: gene Location: 168826-168978 bp Feature: domain Description: Pox_D5 Location: 168835-168952 bp Feature: domain Description: Pox_D5 Location: 1 68835-1 68952 bp Feature: gene Location: 169280-170392 bp Feature: domain Description: COG3943 Location: 169394-170381 bp Feature: domain Description: COG3943 Location: 1 69394-1 70381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein )