myRT

myRT report for GCA_002954455.1_ASM295445v1

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Seq: MSCC01000001.1 Photobacterium aquimaris strain LC2-065 scaffold00001, whole genome shotgun sequence (2500396 bp)
Overview 1 RT 1: 1314862-1317664 bp Neighborhood of RT #1 [1314862, 1317669] lyz_P1 RVT-UG17 SLATT_5 Feature: gene Location: 1314862-1315251 bp Feature: gene Location: 1315238-1315804 bp Feature: domain Description: lyz_P1 Location: 1315361-1315790 bp Feature: domain Description: lyz_P1 Location: 1 31 5361 -1 31 5790 bp Feature: gene Location: 1315776-1316801 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1315782-1316292 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 31 5782-1 31 6292 bp Feature: gene Location: 1316881-1317093 bp Feature: gene Location: 1317100-1317669 bp Feature: domain Description: SLATT_5 Location: 1317118-1317664 bp Feature: domain Description: SLATT_5 Location: 1 31 71 1 8-1 31 7664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_P1 (cd16901), RVT-UG17, SLATT_5 (pfam18160)

Seq: MSCC01000002.1 Photobacterium aquimaris strain LC2-065 scaffold00002, whole genome shotgun sequence (1212059 bp)
Overview 1 RT 1: 297036-302099 bp 2 RT 2: 1081737-1086737 bp Neighborhood of RT #1 [297036, 302122] RVT_N RVT-GII GIIM DacC Neighborhood of RT #2 [1081737, 1086760] Pepdidase_M14_N M14_PaCCP-like RVT_N RVT-GII GIIM InsE PHA02517 Feature: gene Location: 297036-297962 bp Feature: gene Location: 298479-298625 bp Feature: gene Location: 298638-300110 bp Feature: domain Description: RVT_N Location: 298686-298929 bp Feature: domain Description: RVT_N Location: 2 98686-2 9892 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298974-299601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 98974-2 99601 bp Feature: domain Description: GIIM Note: maturase Location: 299661-299886 bp Feature: domain Description: GIIM Note: maturase Location: 2 99661-2 99886 bp Feature: gene Location: 300133-300324 bp Feature: gene Location: 300743-302122 bp Feature: domain Description: DacC Location: 301031-302099 bp Feature: domain Description: DacC Location: 301031-302 099 bp Feature: gene Location: 1081737-1082882 bp Feature: domain Description: Pepdidase_M14_N Location: 1081746-1082064 bp Feature: domain Description: Pepdidase_M14_N Location: 1081746-1082 064 bp Feature: domain Description: M14_PaCCP-like Location: 1082073-1082853 bp Feature: domain Description: M14_PaCCP-like Location: 1082 073-1082 853 bp Feature: gene Location: 1082976-1083185 bp Feature: gene Location: 1083209-1084840 bp Feature: domain Description: RVT_N Location: 1083416-1083659 bp Feature: domain Description: RVT_N Location: 1083416-1083659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083704-1084331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083704-1084331 bp Feature: domain Description: GIIM Note: maturase Location: 1084391-1084616 bp Feature: domain Description: GIIM Note: maturase Location: 1084391-1084616 bp Feature: gene Location: 1085603-1085914 bp Feature: domain Description: InsE Location: 1085606-1085900 bp Feature: domain Description: InsE Location: 1085606-1085900 bp Feature: gene Location: 1086059-1086760 bp Feature: domain Description: PHA02517 Location: 1086101-1086737 bp Feature: domain Description: PHA02 517 Location: 1086101-1086737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DacC (COG1686), Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MSCC01000004.1 Photobacterium aquimaris strain LC2-065 scaffold00004, whole genome shotgun sequence (185711 bp)
Overview 1 RT 1: 1086-4058 bp 2 RT 2: 28983-32669 bp Neighborhood of RT #1 [1086, 4063] RVT_N RVT-GII Neighborhood of RT #2 [28983, 32713] DUF1525 PRK09738 RVT-Retrons ParE_toxin Feature: gene Location: 1086-1703 bp Feature: gene Location: 2090-2362 bp Feature: gene Location: 3620-4063 bp Feature: domain Description: RVT_N Location: 3668-3911 bp Feature: domain Description: RVT_N Location: 3 668-3 911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3956-4058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 956-4058 bp Feature: gene Location: 28983-29441 bp Feature: domain Description: DUF1525 Location: 29106-29424 bp Feature: domain Description: DUF1525 Location: 29106-29424 bp Feature: gene Location: 29804-30046 bp Feature: domain Description: PRK09738 Location: 29897-30041 bp Feature: domain Description: PRK0973 8 Location: 29897-3 0041 bp Feature: gene Location: 30243-31199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30384-30936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 03 84-3 093 6 bp Feature: gene Location: 31491-31742 bp Feature: gene Location: 32369-32713 bp Feature: domain Description: ParE_toxin Location: 32399-32669 bp Feature: domain Description: ParE_toxin Location: 3 23 99-3 2669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DUF1525 (pfam07511), PRK09738 (small toxic polypeptide; Provisional), RVT-Retrons, ParE_toxin (pfam05016)

Seq: MSCC01000007.1 Photobacterium aquimaris strain LC2-065 scaffold00007, whole genome shotgun sequence (33311 bp)
Overview 1 RT 1: 13148-17294 bp Neighborhood of RT #1 [13148, 17458] BrnA_antitoxin COG2929 RVT-UG2 SR_Res_par Feature: gene Location: 13148-13357 bp Feature: domain Description: BrnA_antitoxin Location: 13190-13316 bp Feature: domain Description: BrnA_antitoxin Location: 13190-13316 bp Feature: gene Location: 13350-13646 bp Feature: domain Description: COG2929 Location: 13365-13632 bp Feature: domain Description: COG2929 Location: 13365-13632 bp Feature: gene Location: 14039-15349 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14240-15053 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 14 24 0-15053 bp Feature: gene Location: 15696-16640 bp Feature: gene Location: 16859-17458 bp Feature: domain Description: SR_Res_par Location: 16868-17294 bp Feature: domain Description: SR_Res_par Location: 16868-17294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnA_antitoxin (pfam14384), COG2929 (Uncharacterized conserved protein, DUF497 family ), RVT-UG2, SR_Res_par (cd03767)