myRT

myRT report for GCA_002954555.1_ASM295455v1

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Seq: MSCG01000011.1 Vibrio splendidus strain ORI231 scaffold11_cov119_read178, whole genome shotgun sequence (135828 bp)
Overview 1 RT 1: 17063-20556 bp Neighborhood of RT #1 [17063, 20588] Apolipoprotein RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 17063-17224 bp Feature: gene Location: 17283-17612 bp Feature: domain Description: Apolipoprotein Location: 17349-17520 bp Feature: domain Description: Apolipoprotein Location: 1 7349-1 7520 bp Feature: gene Location: 17905-19659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18187-18865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 87-1 8865 bp Feature: domain Description: GIIM Note: maturase Location: 18931-19144 bp Feature: domain Description: GIIM Note: maturase Location: 1 8931 -1 91 44 bp Feature: domain Description: HNHc Note: nucleases Location: 19432-19576 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9432-1 9576 bp Feature: gene Location: 19863-20171 bp Feature: gene Location: 20202-20588 bp Feature: domain Description: PRK00024 Location: 20307-20556 bp Feature: domain Description: PRK00024 Location: 20307-20556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Apolipoprotein (pfam01442), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: MSCG01000002.1 Vibrio splendidus strain ORI231 scaffold2_cov93_read178, whole genome shotgun sequence (2220369 bp)
Overview 1 RT 1: 2208882-2213701 bp Neighborhood of RT #1 [2208882, 2213712] RVT-Retrons INT_Rci_Hp1_C PRK11815 Feature: gene Location: 2208882-2209100 bp Feature: gene Location: 2209538-2210524 bp Feature: gene Location: 2210532-2211470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2210634-2211228 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 10634-2 2 112 2 8 bp Feature: gene Location: 2211533-2212603 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2212067-2212547 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 2 12 067-2 2 12 547 bp Feature: gene Location: 2212708-2213712 bp Feature: domain Description: PRK11815 Location: 2212723-2213701 bp Feature: domain Description: PRK11815 Location: 2 2 12 72 3-2 2 13701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, INT_Rci_Hp1_C (cd00796), PRK11815 (tRNA dihydrouridine(20/20a) synthase DusA)

Seq: MSCG01000026.1 Vibrio splendidus strain ORI231 scaffold32_cov92_read178, whole genome shotgun sequence (857920 bp)
Overview 1 RT 1: 99695-105506 bp Neighborhood of RT #1 [99695, 105506] HNH_5 RVT_N RVT-GII GIIM Feature: gene Location: 99695-100138 bp Feature: gene Location: 100623-101810 bp Feature: domain Description: HNH_5 Location: 100680-100797 bp Feature: domain Description: HNH_5 Location: 100680-100797 bp Feature: gene Location: 102139-103770 bp Feature: domain Description: RVT_N Location: 102346-102589 bp Feature: domain Description: RVT_N Location: 1023 46-102589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102634-103261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10263 4-103 261 bp Feature: domain Description: GIIM Note: maturase Location: 103321-103546 bp Feature: domain Description: GIIM Note: maturase Location: 103 3 21-103 546 bp Feature: gene Location: 103790-103963 bp Feature: gene Location: 104316-105506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_5 (pfam14279), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MSCG01000009.1 Vibrio splendidus strain ORI231 scaffold9_cov87_read178, whole genome shotgun sequence (1884389 bp)
Overview 1 RT 1: 498263-504976 bp Neighborhood of RT #1 [498263, 504984] PRK11479 RVT-UG2 PRK05367 PRK01202 Feature: gene Location: 498263-498673 bp Feature: gene Location: 498842-499555 bp Feature: domain Description: PRK11479 Location: 498845-499145 bp Feature: domain Description: PRK114 79 Location: 4 9884 5-4 9914 5 bp Feature: gene Location: 500016-501299 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 500217-501000 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 500217-501000 bp Feature: gene Location: 501634-504513 bp Feature: domain Description: PRK05367 Location: 501673-504508 bp Feature: domain Description: PRK05367 Location: 501673-504 508 bp Feature: gene Location: 504604-504984 bp Feature: domain Description: PRK01202 Location: 504613-504976 bp Feature: domain Description: PRK01202 Location: 504 613-504 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11479 (YaeF family permuted papain-like enzyme), RVT-UG2, PRK05367 (aminomethyl-transferring glycine dehydrogenase), PRK01202 (glycine cleavage system protein GcvH)