myRT

myRT report for GCA_002959615.1_ASM295961v1

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Seq: PUEL01000004.1 [Ruminococcus] gnavus ATCC 29149 Ruminococcus_gnavus.1cell.HGAP3_contig4, whole genome shotgun sequence (3539169 bp)
Overview 1 RT 1: 1389053-1394047 bp 2 RT 2: 2755444-2759870 bp 3 RT 3: 2783171-2795055 bp 4 RT 4: 3177641-3181168 bp Neighborhood of RT #1 [1389053, 1394403] bZIP_XBP1 RVT-DGRs DUF3751 Tail_P2_I Neighborhood of RT #2 [2755444, 2759870] MATE_MepA_like RVT-GII HTH_XRE DNA_ligase_A_N Neighborhood of RT #3 [2783171, 2795177] YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 DUF3848 DUF3849 Neighborhood of RT #4 [3177641, 3181257] PHA00653 Avd_like RVT-DGRs RVT-DGRs Phage_holin_4_1 Feature: gene Location: 1389053-1389439 bp Feature: gene Location: 1389734-1390132 bp Feature: domain Description: bZIP_XBP1 Location: 1389995-1390082 bp Feature: domain Description: bZIP_XBP1 Location: 1 389995-1 390082 bp Feature: gene Location: 1390092-1391237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1390341-1390980 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 390341 -1 390980 bp Feature: gene Location: 1391698-1393575 bp Feature: domain Description: DUF3751 Location: 1391725-1392151 bp Feature: domain Description: DUF3751 Location: 1 391 725-1 3921 51 bp Feature: gene Location: 1393588-1394403 bp Feature: domain Description: Tail_P2_I Location: 1393669-1394047 bp Feature: domain Description: Tail_P2_I Location: 1 393669-1 394047 bp Feature: gene Location: 2755444-2756745 bp Feature: domain Description: MATE_MepA_like Location: 2755456-2756713 bp Feature: domain Description: MATE_MepA_like Location: 2755456-275671 3 bp Feature: gene Location: 2756967-2757146 bp Feature: gene Location: 2757236-2758531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2757491-2758181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2757491 -27581 81 bp Feature: gene Location: 2758706-2759512 bp Feature: domain Description: HTH_XRE Location: 2758733-2758904 bp Feature: domain Description: HTH_XRE Location: 2758733-2758904 bp Feature: domain Description: DNA_ligase_A_N Location: 2759237-2759483 bp Feature: domain Description: DNA_ligase_A_N Location: 2759237-2759483 bp Feature: gene Location: 2759565-2759870 bp Feature: gene Location: 2783171-2790487 bp Feature: domain Description: YtxK Location: 2787197-2787872 bp Feature: domain Description: YtxK Location: 27871 97-2787872 bp Feature: domain Description: COG4646 Location: 2787941-2790356 bp Feature: domain Description: COG4646 Location: 2787941 -2790356 bp Feature: gene Location: 2790658-2790903 bp Feature: gene Location: 2790978-2792765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2791248-2792040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2791 248-2792040 bp Feature: domain Description: Intron_maturas2 Location: 2792145-2792361 bp Feature: domain Description: Intron_maturas2 Location: 27921 45-2792361 bp Feature: domain Description: HNHc Note: nucleases Location: 2792541-2792727 bp Feature: domain Description: HNHc Note: nucleases Location: 2792541 -2792727 bp Feature: gene Location: 2792918-2794357 bp Feature: domain Description: KOG1000 Location: 2793353-2793557 bp Feature: domain Description: KOG1 000 Location: 2793353-2793557 bp Feature: gene Location: 2794359-2795177 bp Feature: domain Description: DUF3848 Location: 2794377-2794656 bp Feature: domain Description: DUF3848 Location: 2794377-2794656 bp Feature: domain Description: DUF3849 Location: 2794692-2795055 bp Feature: domain Description: DUF3849 Location: 2794692-2795055 bp Feature: gene Location: 3177641-3178783 bp Feature: domain Description: PHA00653 Location: 3177764-3178781 bp Feature: domain Description: PHA00653 Location: 31 77764-31 78781 bp Feature: gene Location: 3178824-3179180 bp Feature: domain Description: Avd_like Location: 3178854-3179157 bp Feature: domain Description: Avd_like Location: 31 78854-31 791 57 bp Feature: gene Location: 3179507-3179908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3179744-3179903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 79744-31 79903 bp Feature: gene Location: 3180050-3180568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3180056-3180365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 80056-31 80365 bp Feature: gene Location: 3180593-3180772 bp Feature: gene Location: 3180769-3181257 bp Feature: domain Description: Phage_holin_4_1 Location: 3180808-3181168 bp Feature: domain Description: Phage_holin_4_1 Location: 31 80808-31 81 1 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_XBP1 (cd14691), RVT-DGRs, DUF3751 (pfam12571), Tail_P2_I (pfam09684), MATE_MepA_like (cd13143), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )
Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), Phage_holin_4_1 (pfam05105)