myRT

myRT report for GCA_002959635.1_ASM295963v1

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Seq: PUEP01000005.1 Bacteroides ovatus strain ATCC 8483 Bacteroides_ovatus.1cell.HGAP3_contig5, whole genome shotgun sequence (5913077 bp)
Overview 1 RT 1: 1766366-1769868 bp 2 RT 2: 2795654-2807921 bp 3 RT 3: 3333614-3341551 bp 4 RT 4: 4810536-4817661 bp 5 RT 5: 5721866-5727566 bp Neighborhood of RT #1 [1766366, 1769897] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [2795654, 2808046] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Neighborhood of RT #3 [3333614, 3342165] BcsQ RVT_N RVT-GII GIIM N6_Mtase COG4646 Neighborhood of RT #4 [4810536, 4817675] RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3292 COG3292 COG3292 Reg_prop COG3292 Y_Y_Y BaeS PRK15347 YesN Neighborhood of RT #5 [5721866, 5727583] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Feature: gene Location: 1766366-1766659 bp Feature: gene Location: 1766857-1767135 bp Feature: gene Location: 1767098-1768519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1767473-1768175 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 767473-1 7681 75 bp Feature: gene Location: 1768534-1768941 bp Feature: domain Description: Avd_like Location: 1768567-1768876 bp Feature: domain Description: Avd_like Location: 1 768567-1 768876 bp Feature: gene Location: 1769088-1769897 bp Feature: domain Description: DUF1566 Location: 1769619-1769868 bp Feature: domain Description: DUF1 566 Location: 1 76961 9-1 769868 bp Feature: gene Location: 2795654-2797456 bp Feature: domain Description: rpsA Location: 2795723-2797340 bp Feature: domain Description: rpsA Location: 2795723-2797340 bp Feature: gene Location: 2797553-2803510 bp Feature: domain Description: DUF4011 Location: 2798783-2799296 bp Feature: domain Description: DUF401 1 Location: 2798783-2799296 bp Feature: domain Description: DEXXQc_SF1 Location: 2799635-2800496 bp Feature: domain Description: DEXXQc_SF1 Location: 2799635-2800496 bp Feature: domain Description: DEXXQc_SF1 Location: 2801063-2801822 bp Feature: domain Description: DEXXQc_SF1 Location: 2801 063-2801 822 bp Feature: domain Description: TIGR00376 Location: 2801951-2802341 bp Feature: domain Description: TIGR00376 Location: 2801 951 -2802341 bp Feature: domain Description: MTES_1575 Location: 2802494-2802779 bp Feature: domain Description: MTES_1 575 Location: 2802494-2802779 bp Feature: domain Description: DUF3320 Location: 2803019-2803160 bp Feature: domain Description: DUF3320 Location: 280301 9-28031 60 bp Feature: gene Location: 2803512-2804642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2803833-2804376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2803833-2804376 bp Feature: gene Location: 2804848-2807055 bp Feature: gene Location: 2807222-2808046 bp Feature: domain Description: PDDEXK_2 Location: 2807243-2807921 bp Feature: domain Description: PDDEXK_2 Location: 2807243-2807921 bp Feature: gene Location: 3333614-3334369 bp Feature: domain Description: BcsQ Location: 3333617-3334361 bp Feature: domain Description: BcsQ Location: 333361 7-3334361 bp Feature: gene Location: 3334729-3335874 bp Feature: gene Location: 3335828-3337495 bp Feature: RT Description: RVT_N Location: 3335882-3336125 bp Feature: RT Description: RVT_N Location: 3335882-33361 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3336170-3336818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33361 70-333681 8 bp Feature: domain Description: GIIM Note: maturase Location: 3336872-3337103 bp Feature: domain Description: GIIM Note: maturase Location: 3336872-33371 03 bp Feature: gene Location: 3337510-3337791 bp Feature: gene Location: 3338152-3342165 bp Feature: domain Description: N6_Mtase Location: 3338416-3339052 bp Feature: domain Description: N6_Mtase Location: 333841 6-3339052 bp Feature: domain Description: COG4646 Location: 3339817-3341551 bp Feature: domain Description: COG4646 Location: 333981 7-3341 551 bp Feature: gene Location: 4810536-4810760 bp Feature: gene Location: 4811123-4811404 bp Feature: gene Location: 4811419-4813086 bp Feature: RT Description: RVT_N Location: 4811473-4811716 bp Feature: RT Description: RVT_N Location: 481 1 473-481 1 71 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4811761-4812409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 1 761 -481 2409 bp Feature: domain Description: GIIM Note: maturase Location: 4812463-4812694 bp Feature: domain Description: GIIM Note: maturase Location: 481 2463-481 2694 bp Feature: gene Location: 4813222-4813620 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4813231-4813462 bp Feature: domain Description: DDE_Tnp_IS66 Location: 481 3231 -481 3462 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4813483-4813603 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 481 3483-481 3603 bp Feature: gene Location: 4813659-4817675 bp Feature: domain Description: COG3292 Location: 4813722-4813893 bp Feature: domain Description: COG3292 Location: 481 3722-481 3893 bp Feature: domain Description: COG3292 Location: 4813929-4814229 bp Feature: domain Description: COG3292 Location: 481 3929-481 4229 bp Feature: domain Description: COG3292 Location: 4814322-4814565 bp Feature: domain Description: COG3292 Location: 481 4322-481 4565 bp Feature: domain Description: Reg_prop Location: 4814598-4814649 bp Feature: domain Description: Reg_prop Location: 481 4598-481 4649 bp Feature: domain Description: COG3292 Location: 4814880-4815462 bp Feature: domain Description: COG3292 Location: 481 4880-481 5462 bp Feature: domain Description: Y_Y_Y Location: 4815786-4815933 bp Feature: domain Description: Y_Y_Y Location: 481 5786-481 5933 bp Feature: domain Description: BaeS Location: 4816059-4816812 bp Feature: domain Description: BaeS Location: 481 6059-481 681 2 bp Feature: domain Description: PRK15347 Location: 4816923-4817256 bp Feature: domain Description: PRK1 5347 Location: 481 6923-481 7256 bp Feature: domain Description: YesN Location: 4817361-4817661 bp Feature: domain Description: YesN Location: 481 7361 -481 7661 bp Feature: gene Location: 5721866-5722186 bp Feature: domain Description: DUF4133 Location: 5721881-5722151 bp Feature: domain Description: DUF41 33 Location: 5721 881 -57221 51 bp Feature: gene Location: 5722183-5724582 bp Feature: domain Description: Bac_Flav_CT_G Location: 5722186-5724571 bp Feature: domain Description: Bac_Flav_CT_G Location: 57221 86-5724571 bp Feature: gene Location: 5725151-5726974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5725415-5726237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572541 5-5726237 bp Feature: domain Description: Intron_maturas2 Location: 5726402-5726654 bp Feature: domain Description: Intron_maturas2 Location: 5726402-5726654 bp Feature: domain Description: HNHc Note: nucleases Location: 5726765-5726936 bp Feature: domain Description: HNHc Note: nucleases Location: 5726765-5726936 bp Feature: gene Location: 5727078-5727215 bp Feature: domain Description: Bac_Flav_CT_G Location: 5727084-5727180 bp Feature: domain Description: Bac_Flav_CT_G Location: 5727084-57271 80 bp Feature: gene Location: 5727212-5727583 bp Feature: domain Description: DUF3876 Location: 5727293-5727566 bp Feature: domain Description: DUF3876 Location: 5727293-5727566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons
PDDEXK_2 (pfam12784), BcsQ (COG1192), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3292 (Periplasmic ligand-binding sensor domain )
Reg_prop (pfam07494), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase), YesN (COG4753), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992)