myRT

myRT report for GCA_002959675.1_ASM295967v1

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Seq: PUEM01000006.1 [Clostridium] bolteae strain ATCC BAA-613 Clostridium_bolteae.1cell.HGAP3_contig6, whole genome shotgun sequence (6568232 bp)
Overview 1 RT 1: 1180278-1183774 bp 2 RT 2: 1450834-1456037 bp 3 RT 3: 1500522-1510544 bp 4 RT 4: 1580326-1584290 bp 5 RT 5: 3245631-3255816 bp 6 RT 6: 3514174-3518970 bp 7 RT 7: 4566688-4571736 bp 8 RT 8: 4814692-4819078 bp 9 RT 9: 6215505-6221617 bp 10 RT 10: 6308090-6311755 bp Neighborhood of RT #1 [1180278, 1183803] RpoE HipB RVT-GII ZupT MdlB Neighborhood of RT #2 [1450834, 1456327] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #3 [1500522, 1510546] RVT-GII Intron_maturas2 HNHc IME4 PrgI RVT-GII HNHc TraC-F-type DUF3851 Neighborhood of RT #4 [1580326, 1584290] RVT-GII GIIM Neighborhood of RT #5 [3245631, 3255816] N6_N4_Mtase TraC-F-type RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Neighborhood of RT #6 [3514174, 3518981] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Neighborhood of RT #7 [4566688, 4571834] TaR3-like_MBL-fold RVT-GII GIIM DUF3837 PerM Neighborhood of RT #8 [4814692, 4819080] FlgJ Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Neighborhood of RT #9 [6215505, 6221670] PBP2_TRAP_Siap HpcH RVT-GII GIIM PRK08270 NrdH Neighborhood of RT #10 [6308090, 6311775] DDE_5 RVT-GII GIIM RVT-GII MglA Feature: gene Location: 1180278-1180730 bp Feature: domain Description: RpoE Location: 1180320-1180719 bp Feature: domain Description: RpoE Location: 1 1 80320-1 1 8071 9 bp Feature: gene Location: 1181168-1181518 bp Feature: domain Description: HipB Location: 1181204-1181441 bp Feature: domain Description: HipB Location: 1 1 81 204-1 1 81 441 bp Feature: gene Location: 1181893-1182471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1182073-1182412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 82073-1 1 8241 2 bp Feature: gene Location: 1182590-1183357 bp Feature: domain Description: ZupT Location: 1182608-1183355 bp Feature: domain Description: ZupT Location: 1 1 82608-1 1 83355 bp Feature: gene Location: 1183471-1183803 bp Feature: domain Description: MdlB Location: 1183603-1183774 bp Feature: domain Description: MdlB Location: 1 1 83603-1 1 83774 bp Feature: gene Location: 1450834-1451340 bp Feature: gene Location: 1451595-1451861 bp Feature: gene Location: 1451900-1453717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1452164-1452983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4521 64-1 452983 bp Feature: domain Description: Intron_maturas2 Location: 1453055-1453358 bp Feature: domain Description: Intron_maturas2 Location: 1 453055-1 453358 bp Feature: domain Description: HNHc Note: nucleases Location: 1453538-1453682 bp Feature: domain Description: HNHc Note: nucleases Location: 1 453538-1 453682 bp Feature: gene Location: 1453808-1454374 bp Feature: domain Description: T4SS-DNA_transf Location: 1453979-1454282 bp Feature: domain Description: T4SS-DNA_transf Location: 1 453979-1 454282 bp Feature: gene Location: 1454447-1456327 bp Feature: domain Description: SR_TndX_transposase Location: 1454471-1454879 bp Feature: domain Description: SR_TndX_transposase Location: 1 454471 -1 454879 bp Feature: domain Description: Recombinase Location: 1454978-1455341 bp Feature: domain Description: Recombinase Location: 1 454978-1 455341 bp Feature: domain Description: Zn_ribbon_recom Location: 1455383-1455566 bp Feature: domain Description: Zn_ribbon_recom Location: 1 455383-1 455566 bp Feature: domain Description: DUF4368 Location: 1455851-1456037 bp Feature: domain Description: DUF4368 Location: 1 455851 -1 456037 bp Feature: gene Location: 1500522-1501193 bp Feature: gene Location: 1501308-1501523 bp Feature: gene Location: 1501769-1503601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1502033-1502864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 502033-1 502864 bp Feature: domain Description: Intron_maturas2 Location: 1502936-1503251 bp Feature: domain Description: Intron_maturas2 Location: 1 502936-1 503251 bp Feature: domain Description: HNHc Note: nucleases Location: 1503398-1503572 bp Feature: domain Description: HNHc Note: nucleases Location: 1 503398-1 503572 bp Feature: gene Location: 1503677-1503979 bp Feature: gene Location: 1503994-1504539 bp Feature: domain Description: IME4 Location: 1504003-1504522 bp Feature: domain Description: IME4 Location: 1 504003-1 504522 bp Feature: gene Location: 1504554-1505009 bp Feature: domain Description: PrgI Location: 1504569-1504842 bp Feature: domain Description: PrgI Location: 1 504569-1 504842 bp Feature: gene Location: 1504966-1505940 bp Feature: gene Location: 1506663-1508636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506999-1507737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 506999-1 507737 bp Feature: domain Description: HNHc Note: nucleases Location: 1508292-1508430 bp Feature: domain Description: HNHc Note: nucleases Location: 1 508292-1 508430 bp Feature: gene Location: 1508802-1510169 bp Feature: domain Description: TraC-F-type Location: 1508826-1509969 bp Feature: domain Description: TraC-F-type Location: 1 508826-1 509969 bp Feature: gene Location: 1510172-1510546 bp Feature: domain Description: DUF3851 Location: 1510175-1510544 bp Feature: domain Description: DUF3851 Location: 1 51 01 75-1 51 0544 bp Feature: gene Location: 1580326-1580457 bp Feature: gene Location: 1581080-1581217 bp Feature: gene Location: 1581334-1582662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1581592-1582207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 581 592-1 582207 bp Feature: domain Description: GIIM Note: maturase Location: 1582270-1582489 bp Feature: domain Description: GIIM Note: maturase Location: 1 582270-1 582489 bp Feature: gene Location: 1582892-1583980 bp Feature: gene Location: 1583973-1584290 bp Feature: gene Location: 3245631-3246590 bp Feature: domain Description: N6_N4_Mtase Location: 3245709-3246561 bp Feature: domain Description: N6_N4_Mtase Location: 3245709-3246561 bp Feature: gene Location: 3246587-3247963 bp Feature: domain Description: TraC-F-type Location: 3246602-3247826 bp Feature: domain Description: TraC-F-type Location: 3246602-3247826 bp Feature: gene Location: 3248129-3250102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248465-3249203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248465-3249203 bp Feature: domain Description: HNHc Note: nucleases Location: 3249758-3249896 bp Feature: domain Description: HNHc Note: nucleases Location: 3249758-3249896 bp Feature: gene Location: 3250825-3251829 bp Feature: gene Location: 3251966-3252154 bp Feature: gene Location: 3252362-3252559 bp Feature: gene Location: 3252737-3254569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253001-3253832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253001 -3253832 bp Feature: domain Description: Intron_maturas2 Location: 3253904-3254219 bp Feature: domain Description: Intron_maturas2 Location: 3253904-325421 9 bp Feature: domain Description: HNHc Note: nucleases Location: 3254366-3254540 bp Feature: domain Description: HNHc Note: nucleases Location: 3254366-3254540 bp Feature: gene Location: 3254815-3255030 bp Feature: gene Location: 3255145-3255816 bp Feature: gene Location: 3514174-3515052 bp Feature: domain Description: UgpA Location: 3514192-3515038 bp Feature: domain Description: UgpA Location: 351 41 92-351 5038 bp Feature: gene Location: 3515067-3515900 bp Feature: domain Description: UgpE Location: 3515082-3515895 bp Feature: domain Description: UgpE Location: 351 5082-351 5895 bp Feature: gene Location: 3516332-3517339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3516497-3517052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 351 6497-351 7052 bp Feature: gene Location: 3517351-3518094 bp Feature: domain Description: NAT_SF Location: 3517558-3517675 bp Feature: domain Description: NAT_SF Location: 351 7558-351 7675 bp Feature: domain Description: YoaP Location: 3517957-3518083 bp Feature: domain Description: YoaP Location: 351 7957-351 8083 bp Feature: gene Location: 3518397-3518981 bp Feature: domain Description: spoVFB Location: 3518400-3518970 bp Feature: domain Description: spoVFB Location: 351 8400-351 8970 bp Feature: gene Location: 4566688-4567521 bp Feature: domain Description: TaR3-like_MBL-fold Location: 4566712-4567348 bp Feature: domain Description: TaR3-like_MBL-fold Location: 456671 2-4567348 bp Feature: gene Location: 4567665-4568030 bp Feature: gene Location: 4568546-4569937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4568861-4569488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4568861 -4569488 bp Feature: domain Description: GIIM Note: maturase Location: 4569542-4569770 bp Feature: domain Description: GIIM Note: maturase Location: 4569542-4569770 bp Feature: gene Location: 4570075-4570383 bp Feature: domain Description: DUF3837 Location: 4570081-4570378 bp Feature: domain Description: DUF3837 Location: 4570081 -4570378 bp Feature: gene Location: 4570587-4571834 bp Feature: domain Description: PerM Location: 4570704-4571736 bp Feature: domain Description: PerM Location: 4570704-4571 736 bp Feature: gene Location: 4814692-4815636 bp Feature: domain Description: FlgJ Location: 4814710-4815181 bp Feature: domain Description: FlgJ Location: 481 471 0-481 51 81 bp Feature: gene Location: 4815640-4816068 bp Feature: domain Description: Phage_holin_4_1 Location: 4815694-4816021 bp Feature: domain Description: Phage_holin_4_1 Location: 481 5694-481 6021 bp Feature: gene Location: 4816139-4817179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4816349-4816964 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 481 6349-481 6964 bp Feature: gene Location: 4817537-4817926 bp Feature: domain Description: Avd_like Location: 4817597-4817900 bp Feature: domain Description: Avd_like Location: 481 7597-481 7900 bp Feature: gene Location: 4817986-4819080 bp Feature: domain Description: PHA00653 Location: 4818079-4819078 bp Feature: domain Description: PHA00653 Location: 481 8079-481 9078 bp Feature: gene Location: 6215505-6216599 bp Feature: domain Description: PBP2_TRAP_Siap Location: 6215685-6216585 bp Feature: domain Description: PBP2_TRAP_Siap Location: 621 5685-621 6585 bp Feature: gene Location: 6216614-6217387 bp Feature: domain Description: HpcH Location: 6216620-6217370 bp Feature: domain Description: HpcH Location: 621 6620-621 7370 bp Feature: gene Location: 6217617-6218702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6217626-6218253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621 7626-621 8253 bp Feature: domain Description: GIIM Note: maturase Location: 6218307-6218535 bp Feature: domain Description: GIIM Note: maturase Location: 621 8307-621 8535 bp Feature: gene Location: 6218943-6219239 bp Feature: gene Location: 6219250-6221670 bp Feature: domain Description: PRK08270 Location: 6219256-6221236 bp Feature: domain Description: PRK08270 Location: 621 9256-6221 236 bp Feature: domain Description: NrdH Location: 6221440-6221617 bp Feature: domain Description: NrdH Location: 6221 440-6221 61 7 bp Feature: gene Location: 6308090-6308722 bp Feature: domain Description: DDE_5 Location: 6308246-6308612 bp Feature: domain Description: DDE_5 Location: 6308246-630861 2 bp Feature: gene Location: 6308940-6309077 bp Feature: gene Location: 6309204-6309668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6309210-6309300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630921 0-6309300 bp Feature: domain Description: GIIM Note: maturase Location: 6309360-6309585 bp Feature: domain Description: GIIM Note: maturase Location: 6309360-6309585 bp Feature: gene Location: 6309749-6310246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6310115-6310190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 01 1 5-631 01 90 bp Feature: gene Location: 6310772-6310981 bp Feature: gene Location: 6310981-6311775 bp Feature: domain Description: MglA Location: 6311023-6311755 bp Feature: domain Description: MglA Location: 631 1 023-631 1 755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), HipB (COG1396), RVT-GII, ZupT (COG0428), MdlB (COG1132), Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), SR_TndX_transposase (cd03770), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), IME4 (COG4725), PrgI (pfam12666), TraC-F-type (TIGR02746), DUF3851 (pfam12962), GIIM (pfam08388), N6_N4_Mtase (pfam01555), UgpA (COG1175), UgpE (COG0395)
RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305), TaR3-like_MBL-fold (cd07715), DUF3837 (pfam12939), PerM (COG0628), FlgJ (COG1705), Phage_holin_4_1 (pfam05105), RVT-DGRs
Avd_like (cd16376), PHA00653 (mtd;major tropism determinant), PBP2_TRAP_Siap (cd13672), HpcH (COG3836), PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), DDE_5 (pfam13546), MglA (COG1129)