myRT

myRT report for GCA_002959695.1_ASM295969v1

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Seq: PUEO01000011.1 Bacteroides thetaiotaomicron strain VPI-5482 Bacteroides_thetaiotaomicron.1cell.HGAP3_contig11, whole genome shotgun sequence (652644 bp)
Overview 1 RT 1: 149109-152993 bp 2 RT 2: 162709-167888 bp Neighborhood of RT #1 [149109, 153013] Avd_like RVT-DGRs YbdN Neighborhood of RT #2 [162709, 167902] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 149109-149480 bp Feature: domain Description: Avd_like Location: 149136-149439 bp Feature: domain Description: Avd_like Location: 1 491 36-1 49439 bp Feature: gene Location: 149613-149825 bp Feature: gene Location: 150078-151262 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 150159-150873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 501 59-1 50873 bp Feature: gene Location: 151286-151732 bp Feature: gene Location: 151754-153013 bp Feature: domain Description: YbdN Location: 151760-152993 bp Feature: domain Description: YbdN Location: 1 51 760-1 52993 bp Feature: gene Location: 162709-164736 bp Feature: domain Description: Bac_Flav_CT_G Location: 162712-164731 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 6271 2-1 64731 bp Feature: gene Location: 164929-165135 bp Feature: gene Location: 165315-167018 bp Feature: domain Description: RVT_N Location: 165414-165657 bp Feature: domain Description: RVT_N Location: 1 6541 4-1 65657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165702-166353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65702-1 66353 bp Feature: domain Description: GIIM Note: maturase Location: 166404-166638 bp Feature: domain Description: GIIM Note: maturase Location: 1 66404-1 66638 bp Feature: gene Location: 167021-167623 bp Feature: domain Description: Bac_Flav_CT_G Location: 167135-167597 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 671 35-1 67597 bp Feature: gene Location: 167630-167902 bp Feature: domain Description: DUF3876 Location: 167657-167888 bp Feature: domain Description: DUF3876 Location: 1 67657-1 67888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: PUEO01000014.1 Bacteroides thetaiotaomicron strain VPI-5482 Bacteroides_thetaiotaomicron.1cell.HGAP3_contig14, whole genome shotgun sequence (4144501 bp)
Overview 1 RT 1: 1242564-1254402 bp Neighborhood of RT #1 [1242564, 1254518] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1242564-1242764 bp Feature: gene Location: 1243166-1245352 bp Feature: gene Location: 1245558-1246691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1245882-1246428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 45882 -12 4642 8 bp Feature: gene Location: 1246728-1252550 bp Feature: domain Description: DUF4011 Location: 1247883-1248396 bp Feature: domain Description: DUF4011 Location: 12 47883-12 48396 bp Feature: domain Description: DEXXQc_SF1 Location: 1248735-1249278 bp Feature: domain Description: DEXXQc_SF1 Location: 12 48735-12 492 78 bp Feature: domain Description: DEXXQc_SF1 Location: 1250169-1250922 bp Feature: domain Description: DEXXQc_SF1 Location: 12 50169-12 5092 2 bp Feature: domain Description: TIGR00376 Location: 1251051-1251444 bp Feature: domain Description: TIGR00376 Location: 12 51051-12 51444 bp Feature: domain Description: MTES_1575 Location: 1251594-1251882 bp Feature: domain Description: MTES_1575 Location: 12 51594-12 51882 bp Feature: domain Description: DUF3320 Location: 1252056-1252200 bp Feature: domain Description: DUF332 0 Location: 12 52 056-12 52 2 00 bp Feature: gene Location: 1252719-1254518 bp Feature: domain Description: rpsA Location: 1252788-1254402 bp Feature: domain Description: rpsA Location: 12 52 788-12 54402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: PUEO01000004.1 Bacteroides thetaiotaomicron strain VPI-5482 Bacteroides_thetaiotaomicron.1cell.HGAP3_contig4, whole genome shotgun sequence (1456036 bp)
Overview 1 RT 1: 39002-41613 bp 2 RT 2: 208991-214380 bp 3 RT 3: 219666-230238 bp Neighborhood of RT #1 [39002, 41613] RVT-GII GIIM RVT-GII Neighborhood of RT #2 [208991, 214391] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #3 [219666, 230567] Relaxase YWFCY SXT_TraD TrwB RVT-GII GIIM RVT-GII GIIM AtoC TMAO_torS Feature: gene Location: 39002-39208 bp Feature: gene Location: 39344-39601 bp Feature: gene Location: 39701-40219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39713-39953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9713 -3 9953 bp Feature: domain Description: GIIM Note: maturase Location: 39965-40196 bp Feature: domain Description: GIIM Note: maturase Location: 3 9965-40196 bp Feature: gene Location: 40393-40881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40729-40867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40729-40867 bp Feature: gene Location: 41171-41416 bp Feature: gene Location: 41485-41613 bp Feature: gene Location: 208991-209362 bp Feature: domain Description: DUF3876 Location: 209072-209345 bp Feature: domain Description: DUF3 876 Location: 209072-2093 45 bp Feature: gene Location: 209377-209505 bp Feature: gene Location: 209600-211423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209864-210686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209864-210686 bp Feature: domain Description: Intron_maturas2 Location: 210860-211103 bp Feature: domain Description: Intron_maturas2 Location: 210860-211103 bp Feature: domain Description: HNHc Note: nucleases Location: 211214-211385 bp Feature: domain Description: HNHc Note: nucleases Location: 211214-2113 85 bp Feature: gene Location: 211681-211869 bp Feature: gene Location: 211992-214391 bp Feature: domain Description: Bac_Flav_CT_G Location: 211995-214380 bp Feature: domain Description: Bac_Flav_CT_G Location: 211995-2143 80 bp Feature: gene Location: 219666-220922 bp Feature: domain Description: Relaxase Location: 219789-220449 bp Feature: domain Description: Relaxase Location: 219789-220449 bp Feature: gene Location: 220961-223006 bp Feature: domain Description: YWFCY Location: 220967-221144 bp Feature: domain Description: YWFCY Location: 220967-221144 bp Feature: domain Description: SXT_TraD Location: 221567-221804 bp Feature: domain Description: SXT_TraD Location: 221567-221804 bp Feature: domain Description: TrwB Location: 222047-222680 bp Feature: domain Description: TrwB Location: 222047-222680 bp Feature: gene Location: 223170-224462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223380-224037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 3 80-22403 7 bp Feature: domain Description: GIIM Note: maturase Location: 224115-224322 bp Feature: domain Description: GIIM Note: maturase Location: 224115-2243 22 bp Feature: gene Location: 224755-224928 bp Feature: gene Location: 225037-226443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225379-225997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253 79-225997 bp Feature: domain Description: GIIM Note: maturase Location: 226051-226282 bp Feature: domain Description: GIIM Note: maturase Location: 226051-226282 bp Feature: gene Location: 226910-228190 bp Feature: domain Description: AtoC Location: 226913-228185 bp Feature: domain Description: AtoC Location: 226913 -228185 bp Feature: gene Location: 228195-230567 bp Feature: domain Description: TMAO_torS Location: 229158-230238 bp Feature: domain Description: TMAO_torS Location: 229158-23 023 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), Relaxase (pfam03432), YWFCY (pfam14293), SXT_TraD (TIGR03743), TrwB
AtoC (COG2204), TMAO_torS (TIGR02956)