myRT

myRT report for GCA_002961045.1_ASM296104v1

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Seq: POKO01000174.1 Streptococcus suis strain 1369 SS_1369_Contig174, whole genome shotgun sequence (10989 bp)
Overview 1 RT 1: 3-10497 bp Neighborhood of RT #1 [3, 10988] TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 RVT-GII KOG4768 cas_Csn1 strep_RK_lipo Adhesin_P1_N GbpC GbpC Feature: gene Location: 3-1883 bp Feature: domain Description: TraC-F-type Location: 330-1707 bp Feature: domain Description: TraC-F-type Location: 330-1 707 bp Feature: gene Location: 1885-4578 bp Feature: domain Description: Peptidase_M23 Location: 3328-3541 bp Feature: domain Description: Peptidase_M23 Location: 3328-3541 bp Feature: domain Description: Phage_lysozyme2 Location: 3682-4195 bp Feature: domain Description: Phage_lysozyme2 Location: 3682-41 95 bp Feature: domain Description: PRK08581 Location: 4312-4561 bp Feature: domain Description: PRK08581 Location: 431 2-4561 bp Feature: gene Location: 5287-7200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5614-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561 4-6349 bp Feature: domain Description: KOG4768 Location: 6490-6601 bp Feature: domain Description: KOG4768 Location: 6490-6601 bp Feature: domain Description: cas_Csn1 Location: 6757-7039 bp Feature: domain Description: cas_Csn1 Location: 6757-7039 bp Feature: gene Location: 7812-8447 bp Feature: gene Location: 8607-10988 bp Feature: domain Description: strep_RK_lipo Location: 8664-8769 bp Feature: domain Description: strep_RK_lipo Location: 8664-8769 bp Feature: domain Description: Adhesin_P1_N Location: 8919-9108 bp Feature: domain Description: Adhesin_P1 _N Location: 891 9-91 08 bp Feature: domain Description: GbpC Location: 9717-9909 bp Feature: domain Description: GbpC Location: 971 7-9909 bp Feature: domain Description: GbpC Location: 9909-10497 bp Feature: domain Description: GbpC Location: 9909-1 0497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), strep_RK_lipo (TIGR03726), Adhesin_P1_N (pfam18652), GbpC (pfam08363)

Seq: POKO01000328.1 Streptococcus suis strain 1369 SS_1369_Contig328, whole genome shotgun sequence (14769 bp)
Overview 1 RT 1: 3275-12569 bp Neighborhood of RT #1 [3275, 12973] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 3275-3574 bp Feature: gene Location: 3645-4664 bp Feature: domain Description: KOG1000 Location: 3720-3915 bp Feature: domain Description: KOG1000 Location: 372 0-3915 bp Feature: gene Location: 4697-6508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4961-5783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4961-5783 bp Feature: domain Description: Intron_maturas2 Location: 5852-6326 bp Feature: domain Description: Intron_maturas2 Location: 5852 -632 6 bp Feature: domain Description: HNHc Note: nucleases Location: 6326-6491 bp Feature: domain Description: HNHc Note: nucleases Location: 632 6-6491 bp Feature: gene Location: 6748-6948 bp Feature: gene Location: 7073-12973 bp Feature: domain Description: N6_Mtase Location: 9083-9674 bp Feature: domain Description: N6_Mtase Location: 9083-9674 bp Feature: domain Description: COG4646 Location: 10268-12569 bp Feature: domain Description: COG4646 Location: 102 68-12 569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )