myRT

myRT report for GCA_002961125.1_ASM296112v1

Download annotations/find similar RTs

Seq: POKV01000046.1 Streptococcus suis strain 1318 SS_1318_Contig46, whole genome shotgun sequence (154227 bp)
Overview 1 RT 1: 52449-62588 bp Neighborhood of RT #1 [52449, 62588] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 52449-52958 bp Feature: gene Location: 53008-58461 bp Feature: domain Description: N6_Mtase Location: 55012-55603 bp Feature: domain Description: N6_Mtase Location: 5501 2-55603 bp Feature: domain Description: COG4646 Location: 56197-58318 bp Feature: domain Description: COG4646 Location: 561 97-5831 8 bp Feature: gene Location: 58959-60737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59220-60012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59220-6001 2 bp Feature: domain Description: Intron_maturas2 Location: 60117-60348 bp Feature: domain Description: Intron_maturas2 Location: 601 1 7-60348 bp Feature: domain Description: HNHc Note: nucleases Location: 60513-60699 bp Feature: domain Description: HNHc Note: nucleases Location: 6051 3-60699 bp Feature: gene Location: 60875-62218 bp Feature: domain Description: KOG1000 Location: 61154-61469 bp Feature: domain Description: KOG1 000 Location: 61 1 54-61 469 bp Feature: gene Location: 62289-62588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: POKV01000077.1 Streptococcus suis strain 1318 SS_1318_Contig77, whole genome shotgun sequence (1610 bp)
Overview 1 RT 1: 1-1570 bp Neighborhood of RT #1 [1, 1608] RVT-Retrons RVT_1 Feature: gene Location: 1-831 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13-376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13-376 bp Feature: gene Location: 919-1608 bp Feature: RT Description: RVT_1 Location: 1339-1570 bp Feature: RT Description: RVT_1 Location: 1339-1570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RVT_1 (pfam00078)