myRT

myRT report for GCA_002961165.1_ASM296116v1

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Seq: POLA01000141.1 Streptococcus suis strain 1276 SS_1276_Contig141, whole genome shotgun sequence (121744 bp)
Overview 1 RT 1: 44771-48961 bp Neighborhood of RT #1 [44771, 48993] NTP-PPase_iMazG DUF3013 RVT-AbiP2 PrmA Feature: gene Location: 44771-45106 bp Feature: domain Description: NTP-PPase_iMazG Location: 44798-45062 bp Feature: domain Description: NTP-PPase_iMazG Location: 44798-45062 bp Feature: gene Location: 45108-45578 bp Feature: domain Description: DUF3013 Location: 45111-45573 bp Feature: domain Description: DUF301 3 Location: 451 1 1 -45573 bp Feature: gene Location: 45611-47254 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 46022-46478 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 46022-46478 bp Feature: gene Location: 47256-47990 bp Feature: gene Location: 48040-48993 bp Feature: domain Description: PrmA Location: 48049-48961 bp Feature: domain Description: PrmA Location: 48049-48961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_iMazG (cd11536), DUF3013 (pfam11217), RVT-AbiP2, PrmA (pfam06325)

Seq: POLA01000195.1 Streptococcus suis strain 1276 SS_1276_Contig195, whole genome shotgun sequence (44407 bp)
Overview 1 RT 1: 23546-32539 bp Neighborhood of RT #1 [23546, 32979] TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 RVT-GII KOG4768 cas_Csn1 AbiEii AbiEi_4 Feature: gene Location: 23546-25897 bp Feature: domain Description: TraC-F-type Location: 24035-25721 bp Feature: domain Description: TraC-F-type Location: 2 4035-2 572 1 bp Feature: gene Location: 25899-28592 bp Feature: domain Description: Peptidase_M23 Location: 27342-27555 bp Feature: domain Description: Peptidase_M2 3 Location: 2 7342 -2 7555 bp Feature: domain Description: Phage_lysozyme2 Location: 27696-28209 bp Feature: domain Description: Phage_lysozyme2 Location: 2 7696-2 82 09 bp Feature: domain Description: PRK08581 Location: 28326-28575 bp Feature: domain Description: PRK08581 Location: 2 832 6-2 8575 bp Feature: gene Location: 29301-31214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29628-30363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 962 8-30363 bp Feature: domain Description: KOG4768 Location: 30510-30615 bp Feature: domain Description: KOG4768 Location: 30510-30615 bp Feature: domain Description: cas_Csn1 Location: 30771-31053 bp Feature: domain Description: cas_Csn1 Location: 30771-31053 bp Feature: gene Location: 31547-32392 bp Feature: domain Description: AbiEii Location: 31646-32321 bp Feature: domain Description: AbiEii Location: 31646-32 32 1 bp Feature: gene Location: 32389-32979 bp Feature: domain Description: AbiEi_4 Location: 32407-32539 bp Feature: domain Description: AbiEi_4 Location: 32 407-32 539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), AbiEii (pfam08843), AbiEi_4 (pfam13338)

Seq: POLA01000252.1 Streptococcus suis strain 1276 SS_1276_Contig252, whole genome shotgun sequence (2397 bp)
Overview 1 RT 1: 510-2250 bp Neighborhood of RT #1 [510, 2288] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 510-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)