myRT

myRT report for GCA_002961225.1_ASM296122v1

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Seq: POLB01000224.1 Streptococcus suis strain 1275 SS_1275_Contig224, whole genome shotgun sequence (88973 bp)
Overview 1 RT 1: 44711-48901 bp Neighborhood of RT #1 [44711, 48933] NTP-PPase_iMazG DUF3013 RVT-AbiP2 PrmA Feature: gene Location: 44711-45046 bp Feature: domain Description: NTP-PPase_iMazG Location: 44738-45002 bp Feature: domain Description: NTP-PPase_iMazG Location: 44738-45002 bp Feature: gene Location: 45048-45518 bp Feature: domain Description: DUF3013 Location: 45051-45513 bp Feature: domain Description: DUF301 3 Location: 45051 -4551 3 bp Feature: gene Location: 45551-47194 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 45962-46418 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 45962-4641 8 bp Feature: gene Location: 47196-47930 bp Feature: gene Location: 47980-48933 bp Feature: domain Description: PrmA Location: 47992-48901 bp Feature: domain Description: PrmA Location: 47992-48901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_iMazG (cd11536), DUF3013 (pfam11217), RVT-AbiP2, PrmA (pfam06325)

Seq: POLB01000230.1 Streptococcus suis strain 1275 SS_1275_Contig230, whole genome shotgun sequence (62458 bp)
Overview 1 RT 1: 7442-18651 bp 2 RT 2: 41629-50622 bp Neighborhood of RT #1 [7442, 20105] COG2865 PHA03411 COG4646 COG4646 RVT-GII KOG4768 Helicase_C Neighborhood of RT #2 [41629, 51062] TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 RVT-GII KOG4768 cas_Csn1 AbiEii AbiEi_4 Feature: gene Location: 7442-8875 bp Feature: domain Description: COG2865 Location: 7460-8870 bp Feature: domain Description: COG2 865 Location: 7460-8870 bp Feature: gene Location: 8961-15812 bp Feature: domain Description: PHA03411 Location: 12549-12801 bp Feature: domain Description: PHA03411 Location: 12 549-12 801 bp Feature: domain Description: COG4646 Location: 13116-13869 bp Feature: domain Description: COG4646 Location: 13116-13869 bp Feature: domain Description: COG4646 Location: 14139-15657 bp Feature: domain Description: COG4646 Location: 14139-15657 bp Feature: gene Location: 16310-17653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16571-17363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16571-17363 bp Feature: gene Location: 17683-18087 bp Feature: domain Description: KOG4768 Location: 17881-18073 bp Feature: domain Description: KOG4768 Location: 17881-18073 bp Feature: gene Location: 18351-20105 bp Feature: domain Description: Helicase_C Location: 18438-18651 bp Feature: domain Description: Helicase_C Location: 18438-18651 bp Feature: gene Location: 41629-43980 bp Feature: domain Description: TraC-F-type Location: 42406-43804 bp Feature: domain Description: TraC-F-type Location: 42 406-43804 bp Feature: gene Location: 43982-46675 bp Feature: domain Description: Peptidase_M23 Location: 45425-45638 bp Feature: domain Description: Peptidase_M2 3 Location: 4542 5-45638 bp Feature: domain Description: Phage_lysozyme2 Location: 45779-46292 bp Feature: domain Description: Phage_lysozyme2 Location: 45779-462 92 bp Feature: domain Description: PRK08581 Location: 46409-46658 bp Feature: domain Description: PRK08581 Location: 46409-46658 bp Feature: gene Location: 47384-49297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47711-48446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47711-48446 bp Feature: domain Description: KOG4768 Location: 48593-48698 bp Feature: domain Description: KOG4768 Location: 48593-48698 bp Feature: domain Description: cas_Csn1 Location: 48854-49136 bp Feature: domain Description: cas_Csn1 Location: 48854-49136 bp Feature: gene Location: 49630-50475 bp Feature: domain Description: AbiEii Location: 49729-50404 bp Feature: domain Description: AbiEii Location: 4972 9-50404 bp Feature: gene Location: 50472-51062 bp Feature: domain Description: AbiEi_4 Location: 50490-50622 bp Feature: domain Description: AbiEi_4 Location: 50490-5062 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Helicase_C (pfam00271), TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)
cas_Csn1 (TIGR01865), AbiEii (pfam08843), AbiEi_4 (pfam13338)