myRT

myRT report for GCA_002961235.1_ASM296123v1

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Seq: POLC01000019.1 Streptococcus suis strain 1267 SS_1267_Contig19, whole genome shotgun sequence (2397 bp)
Overview 1 RT 1: 110-1850 bp Neighborhood of RT #1 [110, 1888] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 -1 1 63 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1 268-1 499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1 664-1 850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: POLC01000057.1 Streptococcus suis strain 1267 SS_1267_Contig57, whole genome shotgun sequence (40942 bp)
Overview 1 RT 1: 23533-32526 bp Neighborhood of RT #1 [23533, 32966] TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 RVT-GII KOG4768 cas_Csn1 AbiEii AbiEi_4 Feature: gene Location: 23533-25884 bp Feature: domain Description: TraC-F-type Location: 24022-25708 bp Feature: domain Description: TraC-F-type Location: 2 402 2 -2 5708 bp Feature: gene Location: 25886-28579 bp Feature: domain Description: Peptidase_M23 Location: 27329-27542 bp Feature: domain Description: Peptidase_M2 3 Location: 2 732 9-2 7542 bp Feature: domain Description: Phage_lysozyme2 Location: 27683-28196 bp Feature: domain Description: Phage_lysozyme2 Location: 2 7683-2 8196 bp Feature: domain Description: PRK08581 Location: 28313-28562 bp Feature: domain Description: PRK08581 Location: 2 8313-2 8562 bp Feature: gene Location: 29288-31201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29615-30350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9615-30350 bp Feature: domain Description: KOG4768 Location: 30497-30602 bp Feature: domain Description: KOG4768 Location: 30497-30602 bp Feature: domain Description: cas_Csn1 Location: 30758-31040 bp Feature: domain Description: cas_Csn1 Location: 30758-31040 bp Feature: gene Location: 31534-32379 bp Feature: domain Description: AbiEii Location: 31633-32308 bp Feature: domain Description: AbiEii Location: 31633-32 308 bp Feature: gene Location: 32376-32966 bp Feature: domain Description: AbiEi_4 Location: 32394-32526 bp Feature: domain Description: AbiEi_4 Location: 32 394-32 52 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), AbiEii (pfam08843), AbiEi_4 (pfam13338)

Seq: POLC01000062.1 Streptococcus suis strain 1267 SS_1267_Contig62, whole genome shotgun sequence (89125 bp)
Overview 1 RT 1: 44774-48964 bp Neighborhood of RT #1 [44774, 48996] NTP-PPase_iMazG DUF3013 RVT-AbiP2 PrmA Feature: gene Location: 44774-45109 bp Feature: domain Description: NTP-PPase_iMazG Location: 44801-45065 bp Feature: domain Description: NTP-PPase_iMazG Location: 44801-45065 bp Feature: gene Location: 45111-45581 bp Feature: domain Description: DUF3013 Location: 45114-45576 bp Feature: domain Description: DUF3 013 Location: 45114-45576 bp Feature: gene Location: 45614-47257 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 46025-46481 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 46025-46481 bp Feature: gene Location: 47259-47993 bp Feature: gene Location: 48043-48996 bp Feature: domain Description: PrmA Location: 48052-48964 bp Feature: domain Description: PrmA Location: 48052-48964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_iMazG (cd11536), DUF3013 (pfam11217), RVT-AbiP2, PrmA (pfam06325)