myRT

myRT report for GCA_002964565.1_ASM296456v1

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Seq: PQBW01002609.1 Pseudoalteromonas sp. T1lg65 NODE_2609, whole genome shotgun sequence (418 bp)
Overview 1 RT 1: 2-353 bp Neighborhood of RT #1 [2, 415] RVT-Retrons Feature: gene Location: 2-415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11-353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 -353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PQBW01000006.1 Pseudoalteromonas sp. T1lg65 NODE_6, whole genome shotgun sequence (278902 bp)
Overview 1 RT 1: 30683-39439 bp 2 RT 2: 248487-252314 bp Neighborhood of RT #1 [30683, 39651] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III TIGR03986 Neighborhood of RT #2 [248487, 252314] pfam03781 Avd_like RVT-DGRs Feature: gene Location: 30683-30901 bp Feature: gene Location: 32598-32933 bp Feature: domain Description: Cas2_I_II_III Location: 32658-32874 bp Feature: domain Description: Cas2 _I_II_III Location: 32 658-32 874 bp Feature: gene Location: 32885-35608 bp Feature: domain Description: CRISPR_Cas6 Location: 33344-33704 bp Feature: domain Description: CRISPR_Cas6 Location: 33344-33704 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 33932-34535 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 33932 -34535 bp Feature: domain Description: Cas1_I-II-III Location: 34673-35573 bp Feature: domain Description: Cas1_I-II-III Location: 34673-35573 bp Feature: gene Location: 35612-37459 bp Feature: gene Location: 37462-39651 bp Feature: domain Description: TIGR03986 Location: 37600-39439 bp Feature: domain Description: TIGR03986 Location: 37600-39439 bp Feature: gene Location: 248487-249737 bp Feature: domain Description: pfam03781 Location: 248949-249273 bp Feature: domain Description: pfam03781 Location: 2 48949-2 492 73 bp Feature: gene Location: 249798-250151 bp Feature: domain Description: Avd_like Location: 249822-250122 bp Feature: domain Description: Avd_like Location: 2 4982 2 -2 5012 2 bp Feature: gene Location: 250148-251191 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 250589-251168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 50589-2 51168 bp Feature: gene Location: 251417-251692 bp Feature: gene Location: 251679-252314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs