myRT

myRT report for GCA_002965065.1_ASM296506v1

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Seq: PTRE01000106.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_106_length_6650_cov_87, whole genome shotgun sequence (6650 bp)
Overview 1 RT 1: 2461-6054 bp Neighborhood of RT #1 [2461, 6054] YhhI RVT-GII GIIM Feature: gene Location: 2461-3048 bp Feature: gene Location: 3073-3261 bp Feature: domain Description: YhhI Location: 3076-3253 bp Feature: domain Description: YhhI Location: 3076-3253 bp Feature: gene Location: 3368-4693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3647-4304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3647-4304 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4607 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4607 bp Feature: gene Location: 4795-5073 bp Feature: gene Location: 5233-6054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: PTRE01000191.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_192_length_5817_cov_123, whole genome shotgun sequence (5817 bp)
Overview 1 RT 1: 827-4710 bp Neighborhood of RT #1 [827, 4715] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 827-1285 bp Feature: domain Description: dut Location: 833-1280 bp Feature: domain Description: dut Location: 833-12 80 bp Feature: gene Location: 1392-1988 bp Feature: domain Description: slmA Location: 1398-1974 bp Feature: domain Description: slmA Location: 1398-1974 bp Feature: gene Location: 2034-2996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2169-2718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 169-2 718 bp Feature: gene Location: 3292-3948 bp Feature: domain Description: pyrE Location: 3310-3943 bp Feature: domain Description: pyrE Location: 3310-3943 bp Feature: gene Location: 3999-4715 bp Feature: domain Description: rph Location: 4002-4710 bp Feature: domain Description: rph Location: 4002 -4710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: PTRE01000220.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_221_length_523_cov_157, whole genome shotgun sequence (523 bp)
Overview 1 RT 1: 1-424 bp Neighborhood of RT #1 [1, 522] RVT-GII YhhI Feature: gene Location: 1-174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-163 bp Feature: gene Location: 202-522 bp Feature: domain Description: YhhI Location: 220-424 bp Feature: domain Description: YhhI Location: 220-424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YhhI (COG5433)

Seq: PTRE01000226.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_227_length_2816_cov_192, whole genome shotgun sequence (2816 bp)
Overview 1 RT 1: 1-1717 bp Neighborhood of RT #1 [1, 1809] RVT-GII YhhI YhhI YhhI ComJ Feature: gene Location: 1-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-364 bp Feature: gene Location: 696-1325 bp Feature: domain Description: YhhI Location: 699-855 bp Feature: domain Description: YhhI Location: 699-855 bp Feature: domain Description: YhhI Location: 891-1005 bp Feature: domain Description: YhhI Location: 891-1005 bp Feature: domain Description: YhhI Location: 1098-1212 bp Feature: domain Description: YhhI Location: 1098-1212 bp Feature: gene Location: 1333-1809 bp Feature: domain Description: ComJ Location: 1357-1717 bp Feature: domain Description: ComJ Location: 1357-1717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComJ (pfam11033), RVT-GII, YhhI (COG5433)

Seq: PTRE01000273.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_274_length_411_cov_137, whole genome shotgun sequence (411 bp)
Overview 1 RT 1: 1-400 bp Neighborhood of RT #1 [1, 408] RVT-GII Feature: gene Location: 1-408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PTRE01000278.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_279_length_559_cov_102, whole genome shotgun sequence (559 bp)
Overview 1 RT 1: 23-554 bp Neighborhood of RT #1 [23, 556] RVT-GII Feature: gene Location: 23-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PTRE01000279.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_280_length_559_cov_178, whole genome shotgun sequence (559 bp)
Overview 1 RT 1: 23-554 bp Neighborhood of RT #1 [23, 556] RVT-GII Feature: gene Location: 23-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PTRE01000041.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_41_length_24921_cov_128, whole genome shotgun sequence (24921 bp)
Overview 1 RT 1: 109-5357 bp Neighborhood of RT #1 [109, 5359] RVT-GII GIIM cellulose_yhjU PRK15045 Feature: gene Location: 109-300 bp Feature: gene Location: 457-1845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 7-1405 bp Feature: domain Description: GIIM Note: maturase Location: 1453-1684 bp Feature: domain Description: GIIM Note: maturase Location: 1453-168 4 bp Feature: gene Location: 1924-3603 bp Feature: domain Description: cellulose_yhjU Location: 1993-3595 bp Feature: domain Description: cellulose_yhjU Location: 1993-3595 bp Feature: gene Location: 3788-5359 bp Feature: domain Description: PRK15045 Location: 3803-5357 bp Feature: domain Description: PRK15045 Location: 38 03-5357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cellulose_yhjU (TIGR03368), PRK15045 (cellulose biosynthesis protein BcsE; Provisional), RVT-GII, GIIM (pfam08388)