myRT

myRT report for GCA_002965135.1_ASM296513v1

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Seq: PTSE01000051.1 Escherichia sp. MOD1-EC6154 MOD1-EC6154_51_length_19854_cov_41.7542, whole genome shotgun sequence (19854 bp)
Overview 1 RT 1: 17927-19756 bp Neighborhood of RT #1 [17927, 19764] RVT_N RVT-GII Feature: gene Location: 17927-18184 bp Feature: gene Location: 18610-18750 bp Feature: gene Location: 18772-19764 bp Feature: domain Description: RVT_N Location: 18829-19066 bp Feature: domain Description: RVT_N Location: 1 8829-1 9066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19117-19756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 1 7-1 9756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PTSE01000056.1 Escherichia sp. MOD1-EC6154 MOD1-EC6154_56_length_14509_cov_43.013, whole genome shotgun sequence (14509 bp)
Overview 1 RT 1: 5965-10824 bp Neighborhood of RT #1 [5965, 10829] AdoMet_MTases RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 5965-6528 bp Feature: domain Description: AdoMet_MTases Location: 6127-6424 bp Feature: domain Description: AdoMet_MTases Location: 612 7-642 4 bp Feature: gene Location: 6747-7250 bp Feature: gene Location: 7992-9893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8259-9090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 59-9090 bp Feature: domain Description: Intron_maturas2 Location: 9204-9462 bp Feature: domain Description: Intron_maturas2 Location: 92 04-9462 bp Feature: domain Description: HNHc Note: nucleases Location: 9636-9798 bp Feature: domain Description: HNHc Note: nucleases Location: 9636-9798 bp Feature: gene Location: 10088-10540 bp Feature: domain Description: PRK13732 Location: 10094-10538 bp Feature: domain Description: PRK13732 Location: 10094-10538 bp Feature: gene Location: 10596-10829 bp Feature: domain Description: DUF905 Location: 10626-10824 bp Feature: domain Description: DUF905 Location: 1062 6-1082 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PTSE01000063.1 Escherichia sp. MOD1-EC6154 MOD1-EC6154_63_length_7718_cov_47.6041, whole genome shotgun sequence (7718 bp)
Overview 1 RT 1: 4155-6202 bp Neighborhood of RT #1 [4155, 6202] RVT-UG4 Feature: gene Location: 4155-4283 bp Feature: gene Location: 4346-4870 bp Feature: gene Location: 4951-5298 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4954-5107 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4954-5107 bp Feature: gene Location: 5543-5806 bp Feature: gene Location: 5819-6202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: PTSE01000006.1 Escherichia sp. MOD1-EC6154 MOD1-EC6154_6_length_193786_cov_23.2514, whole genome shotgun sequence (193786 bp)
Overview 1 RT 1: 164270-170072 bp Neighborhood of RT #1 [164270, 170072] ribA aconitase_1 RVT-GII GIIM Feature: gene Location: 164270-164923 bp Feature: domain Description: ribA Location: 164345-164915 bp Feature: domain Description: ribA Location: 164 34 5-164 915 bp Feature: gene Location: 164987-167662 bp Feature: domain Description: aconitase_1 Location: 165041-167657 bp Feature: domain Description: aconitase_1 Location: 16504 1-167657 bp Feature: gene Location: 167890-169242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168211-168829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168211-168829 bp Feature: domain Description: GIIM Note: maturase Location: 168877-169096 bp Feature: domain Description: GIIM Note: maturase Location: 168877-169096 bp Feature: gene Location: 169225-169821 bp Feature: gene Location: 169902-170072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)

Seq: PTSE01000090.1 Escherichia sp. MOD1-EC6154 MOD1-EC6154_90_length_2403_cov_55.3778, whole genome shotgun sequence (2403 bp)
Overview 1 RT 1: 1-1741 bp Neighborhood of RT #1 [1, 1741] RVT-UG4 Feature: gene Location: 1-597 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4-385 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4-385 bp Feature: gene Location: 594-1508 bp Feature: gene Location: 1610-1741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4