myRT

myRT report for GCA_002965205.1_ASM296520v1

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Seq: PTSK01000010.1 Escherichia sp. MOD1-EC6144 MOD1-EC6144_10_length_157779_cov_39.8517, whole genome shotgun sequence (157779 bp)
Overview 1 RT 1: 92616-97425 bp Neighborhood of RT #1 [92616, 97430] PRK09678 PRK09678 Psu RVT-Retrons PRK09692 Feature: gene Location: 92616-93062 bp Feature: domain Description: PRK09678 Location: 92625-92697 bp Feature: domain Description: PRK09678 Location: 92625-92697 bp Feature: domain Description: PRK09678 Location: 92820-92970 bp Feature: domain Description: PRK09678 Location: 92820-92970 bp Feature: gene Location: 93136-93708 bp Feature: domain Description: Psu Location: 93154-93691 bp Feature: domain Description: Psu Location: 931 54-93691 bp Feature: gene Location: 93898-95397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94609-95164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94609-951 64 bp Feature: gene Location: 95399-96076 bp Feature: gene Location: 96264-97430 bp Feature: domain Description: PRK09692 Location: 96273-97425 bp Feature: domain Description: PRK09692 Location: 96273-97425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: PTSK01000021.1 Escherichia sp. MOD1-EC6144 MOD1-EC6144_21_length_95898_cov_38.8937, whole genome shotgun sequence (95898 bp)
Overview 1 RT 1: 67064-72866 bp Neighborhood of RT #1 [67064, 72866] ribA aconitase_1 RVT-GII GIIM Feature: gene Location: 67064-67717 bp Feature: domain Description: ribA Location: 67139-67709 bp Feature: domain Description: ribA Location: 67139-67709 bp Feature: gene Location: 67781-70456 bp Feature: domain Description: aconitase_1 Location: 67835-70451 bp Feature: domain Description: aconitase_1 Location: 67835-70451 bp Feature: gene Location: 70684-72036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71005-71623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71005-7162 3 bp Feature: domain Description: GIIM Note: maturase Location: 71671-71890 bp Feature: domain Description: GIIM Note: maturase Location: 71671-71890 bp Feature: gene Location: 72019-72615 bp Feature: gene Location: 72696-72866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)

Seq: PTSK01000048.1 Escherichia sp. MOD1-EC6144 MOD1-EC6144_48_length_21050_cov_59.9879, whole genome shotgun sequence (21050 bp)
Overview 1 RT 1: 1-2709 bp Neighborhood of RT #1 [1, 2709] Y2_Tnp RVT_N RVT-GII Feature: gene Location: 1-198 bp Feature: gene Location: 346-978 bp Feature: domain Description: Y2_Tnp Location: 355-757 bp Feature: domain Description: Y2_Tnp Location: 3 55-757 bp Feature: gene Location: 1158-2150 bp Feature: RT Description: RVT_N Location: 1215-1452 bp Feature: RT Description: RVT_N Location: 1215-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503-2142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503 -2142 bp Feature: gene Location: 2191-2331 bp Feature: gene Location: 2413-2709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Y2_Tnp (pfam04986)