myRT

myRT report for GCA_002965225.1_ASM296522v1

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Seq: PTSM01000017.1 Escherichia sp. MOD1-EC6099 MOD1-EC6099_17_length_119850_cov_41.0144, whole genome shotgun sequence (119850 bp)
Overview 1 RT 1: 25164-30742 bp Neighborhood of RT #1 [25164, 30750] RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 25164-25310 bp Feature: gene Location: 25475-25669 bp Feature: gene Location: 25777-27066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26098-26716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26098-2671 6 bp Feature: domain Description: GIIM Note: maturase Location: 26764-26983 bp Feature: domain Description: GIIM Note: maturase Location: 26764-26983 bp Feature: gene Location: 27358-30033 bp Feature: domain Description: aconitase_1 Location: 27412-30028 bp Feature: domain Description: aconitase_1 Location: 2741 2-30028 bp Feature: gene Location: 30097-30750 bp Feature: domain Description: ribA Location: 30172-30742 bp Feature: domain Description: ribA Location: 301 72-30742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)

Seq: PTSM01000001.1 Escherichia sp. MOD1-EC6099 MOD1-EC6099_1_length_356858_cov_44.0376, whole genome shotgun sequence (356858 bp)
Overview 1 RT 1: 71627-76191 bp Neighborhood of RT #1 [71627, 77093] RVT-Retrons Phage_GPA Feature: gene Location: 71627-71788 bp Feature: gene Location: 71926-72726 bp Feature: gene Location: 72892-73842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73075-73609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73075-73609 bp Feature: gene Location: 74165-74458 bp Feature: gene Location: 74763-77093 bp Feature: domain Description: Phage_GPA Location: 75204-76191 bp Feature: domain Description: Phage_GPA Location: 752 04-76191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)

Seq: PTSM01000023.1 Escherichia sp. MOD1-EC6099 MOD1-EC6099_23_length_59427_cov_47.4888, whole genome shotgun sequence (59427 bp)
Overview 1 RT 1: 45974-49688 bp Neighborhood of RT #1 [45974, 49693] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 45974-46180 bp Feature: gene Location: 46514-46723 bp Feature: gene Location: 46858-48759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47125-47956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47125-47956 bp Feature: domain Description: Intron_maturas2 Location: 48070-48328 bp Feature: domain Description: Intron_maturas2 Location: 48070-483 28 bp Feature: domain Description: HNHc Note: nucleases Location: 48502-48664 bp Feature: domain Description: HNHc Note: nucleases Location: 48502-48664 bp Feature: gene Location: 48954-49403 bp Feature: domain Description: PRK13732 Location: 48960-49401 bp Feature: domain Description: PRK13 73 2 Location: 48960-49401 bp Feature: gene Location: 49460-49693 bp Feature: domain Description: DUF905 Location: 49490-49688 bp Feature: domain Description: DUF905 Location: 49490-49688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PTSM01000003.1 Escherichia sp. MOD1-EC6099 MOD1-EC6099_3_length_299025_cov_42.751, whole genome shotgun sequence (298964 bp)
Overview 1 RT 1: 63466-68930 bp Neighborhood of RT #1 [63466, 68977] Phage_int_SAM_2 Integrase_1 ABC_ATPase ABC_ATPase RVT-Retrons RfaF Feature: gene Location: 63466-64350 bp Feature: domain Description: Phage_int_SAM_2 Location: 63469-63739 bp Feature: domain Description: Phage_int_SAM_2 Location: 634 69-63739 bp Feature: domain Description: Integrase_1 Location: 63772-64216 bp Feature: domain Description: Integrase_1 Location: 63772-64 216 bp Feature: gene Location: 64792-66120 bp Feature: domain Description: ABC_ATPase Location: 64846-64939 bp Feature: domain Description: ABC_ATPase Location: 64 84 6-64 939 bp Feature: domain Description: ABC_ATPase Location: 65335-65530 bp Feature: domain Description: ABC_ATPase Location: 65335-65530 bp Feature: gene Location: 66117-67088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66249-66816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6624 9-66816 bp Feature: gene Location: 67276-67497 bp Feature: gene Location: 67919-68977 bp Feature: domain Description: RfaF Location: 68072-68930 bp Feature: domain Description: RfaF Location: 68072-68930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), ABC_ATPase (pfam09818), RVT-Retrons, RfaF (COG0859)