myRT

myRT report for GCA_002965245.1_ASM296524v1

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Seq: PTRU01000012.1 Escherichia sp. MOD1-EC6021 MOD1-EC6021_12_length_155230_cov_31.6514, whole genome shotgun sequence (155230 bp)
Overview 1 RT 1: 124527-128406 bp Neighborhood of RT #1 [124527, 128411] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 124527-124985 bp Feature: domain Description: dut Location: 124533-124980 bp Feature: domain Description: dut Location: 1 24533-1 24980 bp Feature: gene Location: 125092-125688 bp Feature: domain Description: slmA Location: 125098-125674 bp Feature: domain Description: slmA Location: 1 25098-1 25674 bp Feature: gene Location: 125732-126691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125867-126416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 25867-1 2641 6 bp Feature: gene Location: 126988-127644 bp Feature: domain Description: pyrE Location: 127006-127639 bp Feature: domain Description: pyrE Location: 1 27006-1 27639 bp Feature: gene Location: 127695-128411 bp Feature: domain Description: rph Location: 127698-128406 bp Feature: domain Description: rph Location: 1 27698-1 28406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PTRU01000053.1 Escherichia sp. MOD1-EC6021 MOD1-EC6021_53_length_12350_cov_29.7938, whole genome shotgun sequence (12350 bp)
Overview 1 RT 1: 1625-4436 bp Neighborhood of RT #1 [1625, 4447] YkfC RVT-GII PHA02517 Feature: gene Location: 1625-1777 bp Feature: gene Location: 1858-2874 bp Feature: domain Description: YkfC Location: 2554-2824 bp Feature: domain Description: YkfC Location: 2 554-2 82 4 bp Feature: gene Location: 2735-3547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2828-3407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 8-3407 bp Feature: gene Location: 3720-3905 bp Feature: gene Location: 4028-4447 bp Feature: domain Description: PHA02517 Location: 4031-4436 bp Feature: domain Description: PHA02 517 Location: 4031-4436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: PTRU01000064.1 Escherichia sp. MOD1-EC6021 MOD1-EC6021_64_length_6020_cov_43.9699, whole genome shotgun sequence (6020 bp)
Overview 1 RT 1: 2-3985 bp Neighborhood of RT #1 [2, 3987] DUF1281 DUF1281_C RVT-GII GIIM HNHc RVT_N RVT-GII PRK09183 Feature: gene Location: 2-874 bp Feature: domain Description: DUF1281 Location: 71-599 bp Feature: domain Description: DUF1281 Location: 71-599 bp Feature: domain Description: DUF1281_C Location: 605-845 bp Feature: domain Description: DUF1281_C Location: 605-845 bp Feature: gene Location: 951-1850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1404 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -1404 bp Feature: domain Description: HNHc Note: nucleases Location: 1635-1794 bp Feature: domain Description: HNHc Note: nucleases Location: 163 5-1794 bp Feature: gene Location: 1942-2676 bp Feature: RT Description: RVT_N Location: 1999-2236 bp Feature: RT Description: RVT_N Location: 1999-223 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2287-2653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2287-2653 bp Feature: gene Location: 2717-2857 bp Feature: gene Location: 3208-3987 bp Feature: domain Description: PRK09183 Location: 3214-3985 bp Feature: domain Description: PRK09183 Location: 3 214-3 985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DUF1281 (pfam06924), DUF1281_C (pfam18406), GIIM (pfam08388), HNHc (smart00507)