myRT

myRT report for GCA_002965345.1_ASM296534v1

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Seq: PTSR01000003.1 Escherichia sp. MOD1-EC5950 MOD1-EC5950_3_length_383210_cov_34.6332, whole genome shotgun sequence (383210 bp)
Overview 1 RT 1: 212912-218489 bp Neighborhood of RT #1 [212912, 218497] RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 212912-213058 bp Feature: gene Location: 213223-213417 bp Feature: gene Location: 213525-214877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213846-214464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3846-21 4464 bp Feature: domain Description: GIIM Note: maturase Location: 214512-214731 bp Feature: domain Description: GIIM Note: maturase Location: 21 451 2-21 4731 bp Feature: gene Location: 215105-217780 bp Feature: domain Description: aconitase_1 Location: 215159-217775 bp Feature: domain Description: aconitase_1 Location: 21 51 59-21 7775 bp Feature: gene Location: 217844-218497 bp Feature: domain Description: ribA Location: 217919-218489 bp Feature: domain Description: ribA Location: 21 791 9-21 8489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)

Seq: PTSR01000043.1 Escherichia sp. MOD1-EC5950 MOD1-EC5950_43_length_21676_cov_54.8631, whole genome shotgun sequence (21676 bp)
Overview 1 RT 1: 13892-17969 bp Neighborhood of RT #1 [13892, 17974] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 13892-14395 bp Feature: gene Location: 14793-15002 bp Feature: gene Location: 15137-17038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15404-16235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15404-162 35 bp Feature: domain Description: Intron_maturas2 Location: 16349-16607 bp Feature: domain Description: Intron_maturas2 Location: 16349-16607 bp Feature: domain Description: HNHc Note: nucleases Location: 16781-16943 bp Feature: domain Description: HNHc Note: nucleases Location: 16781-16943 bp Feature: gene Location: 17233-17685 bp Feature: domain Description: PRK13732 Location: 17239-17683 bp Feature: domain Description: PRK13732 Location: 172 39-17683 bp Feature: gene Location: 17741-17974 bp Feature: domain Description: DUF905 Location: 17771-17969 bp Feature: domain Description: DUF905 Location: 17771-17969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PTSR01000045.1 Escherichia sp. MOD1-EC5950 MOD1-EC5950_45_length_20009_cov_59.0427, whole genome shotgun sequence (20009 bp)
Overview 1 RT 1: 18060-19889 bp Neighborhood of RT #1 [18060, 19897] RVT_N RVT-GII Feature: gene Location: 18060-18317 bp Feature: gene Location: 18743-18883 bp Feature: gene Location: 18905-19897 bp Feature: domain Description: RVT_N Location: 18962-19199 bp Feature: domain Description: RVT_N Location: 18962-19199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19250-19889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19250-19889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PTSR01000046.1 Escherichia sp. MOD1-EC5950 MOD1-EC5950_46_length_18851_cov_62.2252, whole genome shotgun sequence (18851 bp)
Overview 1 RT 1: 2414-6224 bp 2 RT 2: 15206-17669 bp Neighborhood of RT #1 [2414, 6224] RVT-UG4 RVT-UG4 Neighborhood of RT #2 [15206, 17669] LuxR_C_like RVT-UG4 Feature: gene Location: 2414-3316 bp Feature: gene Location: 4177-4305 bp Feature: gene Location: 4368-4892 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4716-4863 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4 716-4 863 bp Feature: gene Location: 4973-5320 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4976-5129 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4 976-5129 bp Feature: gene Location: 5565-5828 bp Feature: gene Location: 5841-6224 bp Feature: gene Location: 15206-15505 bp Feature: domain Description: LuxR_C_like Location: 15281-15434 bp Feature: domain Description: LuxR_C_like Location: 15281-154 34 bp Feature: gene Location: 15531-15758 bp Feature: gene Location: 15752-16525 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15866-16313 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15866-16313 bp Feature: gene Location: 16522-17436 bp Feature: gene Location: 17538-17669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, LuxR_C_like (cd06170)